Scaffold Ga0209102_1008642

Overview

Basic Information

• Taxon OID: 3300025794
• Scaffold ID: Ga0209102_1008642
• Source Dataset Name: Hot spring microbial mat communities from California, USA to study Microbial Dark Matter (Phase II) - Cone Pool mat layer H metaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2852
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Microbial Mats → Hot Spring Microbial Mat → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii)

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 37.4127
  • Long. (^o): -118.504

Associated Families

Family	Category	Number of Sequences	3D Structure?
F043157	Metagenome / Metatranscriptome	157	Y
F094910	Metagenome / Metatranscriptome	105	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209102_10086422	F094910	AGGAGG	VRKLLSIGLVLALLVTFIVPVAVLAQDECCEYTPPECGPLPAKNTKTLAGAAVWSLLAITDIMGKAVCATTGQLACNLGGWSDQLGVVAVDVTAVGLEGVAGLLEYVMDAFVGMPDLGKALGDLLRGIADAIAGIEE
Ga0209102_10086423	F043157	GGAGG	MRIQGKCFRNCVCLSIQKRTERMQRELIIISRAKSLERRIR