3300025794: Hot spring microbial mat communities from California, USA to study Microbial Dark Matter (Phase II) - Cone Pool mat layer H metaG (SPAdes)

Overview

Basic Information

• IMG/M Taxon OID: 3300025794
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0111485 | Gp0147101 | Ga0209102
• Sample Name: Hot spring microbial mat communities from California, USA to study Microbial Dark Matter (Phase II) - Cone Pool mat layer H metaG (SPAdes)
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 226036176
• Sequencing Scaffolds: 6
• Novel Protein Genes: 7
• Associated Families: 7

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon	2
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	1
All Organisms → cellular organisms → Bacteria	1
Not Available	2

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii)
• Type: Environmental
• Taxonomy: Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Microbial Mats → Hot Spring Microbial Mat → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii)

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): aquatic biome → hot spring → microbial mat material
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Water (non-saline)

Location Information

• Location: USA: California
• Coordinates
  • Lat. (^o): 37.4127
  • Long. (^o): -118.504
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006925	Metagenome	362	Y
F008219	Metagenome	337	Y
F029929	Metagenome	187	Y
F043157	Metagenome / Metatranscriptome	157	Y
F049080	Metagenome	147	Y
F094910	Metagenome / Metatranscriptome	105	Y
F102093	Metagenome	102	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0209102_1004353	All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon	5068
Ga0209102_1008642	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	2852
Ga0209102_1012354	All Organisms → cellular organisms → Bacteria	2110
Ga0209102_1030343	Not Available	1070
Ga0209102_1057291	All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon	689
Ga0209102_1061774	Not Available	655

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0209102_1004353	Ga0209102_10043535	F008219	MPNYLIEIILVVQAKNPEARKIADYIIDIPIPDKEIENKIETMRVEEIVEIPNQKPR
Ga0209102_1008642	Ga0209102_10086422	F094910	VRKLLSIGLVLALLVTFIVPVAVLAQDECCEYTPPECGPLPAKNTKTLAGAAVWSLLAITDIMGKAVCATTGQLACNLGGWSDQLGVVAVDVTAVGLEGVAGLLEYVMDAFVGMPDLGKALGDLLRGIADAIAGIEE
Ga0209102_1008642	Ga0209102_10086423	F043157	MRIQGKCFRNCVCLSIQKRTERMQRELIIISRAKSLERRIR
Ga0209102_1012354	Ga0209102_10123543	F049080	MAEELIAKLSLTKEDIVHLYHGGLLSVKINGKHTSASLEISCGEIPERKAMRIRFKTIDA
Ga0209102_1030343	Ga0209102_10303432	F102093	VPAKENRKIMKHGTSGVIAIPKPYRDYHNLTPGNTVTILYDSLLLIIPKTHENLLHEKAELIDKLLGQTPMEEPK
Ga0209102_1057291	Ga0209102_10572912	F029929	FQQSVDFELYEWLLKEQKRRKARSIQDVIRQVLRETKAEAEKKHG
Ga0209102_1061774	Ga0209102_10617742	F006925	LAVEVSVLENFGREAELRKKWMRMWERLGVRILKMPRWMQEIVLEDINTAIRNRIAIMEMIENAKRNR