Scaffold Ga0208899_1027073

Overview

Basic Information

• Taxon OID: 3300025759
• Scaffold ID: Ga0208899_1027073
• Source Dataset Name: Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Nov_24 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2749
• Total Scaffold Genes: 12
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 11 (91.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location

• Location Name: USA: Delaware Bay
• Coordinates
  • Lat. (^o): 39.12
  • Long. (^o): -75.25

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006383	Metagenome	374	Y
F006867	Metagenome / Metatranscriptome	363	Y
F062169	Metagenome / Metatranscriptome	131	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0208899_102707311	F006383	GGAGG	MLIKDKMWKVQQPGTILRARHSARRGQLALVLAKPYSGPRPSNGYPPTQYVKMQILSSGERIEESLTNANNCWDIVSEP
Ga0208899_10270736	F062169	AGGAG	MSVQEHIENILNAEGQAALDAWYVAIHEHPQSAMDIYDEVADHLVANTFMY
Ga0208899_10270737	F006867	GGAG	MLYGEELLKSIQDRCRIQPGMLIRSRPEGFGENAPHGGKVALVRKVSPGCKFDRDYEGAEEHIFYVCEPFDGTDEFVDYVCNMEQVS