Scaffold Ga0207912_100338

Overview

Basic Information

• Taxon OID: 3300025752
• Scaffold ID: Ga0207912_100338
• Source Dataset Name: Marine microbial communities from the Deep Atlantic Ocean - MMD3.0 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 696
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 1

Taxonomy: All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Coscinodiscophyceae → Thalassiosirophycidae → Thalassiosirales (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition

Source Dataset Sampling Location

• Location Name: Balearic Sea, Spain
• Coordinates
  • Lat. (^o): 40.83194
  • Long. (^o): 2.44806
  • Depth (m): 1500

Associated Families

Family	Category	Number of Sequences	3D Structure?
F093912	Metagenome / Metatranscriptome	106	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0207912_1003381	F093912	N/A	YSAGMFNLQKTQKVRQPKAIITILKALLVKIKIFRTKPVALHFNNLFFNHQSYVFKKLKKKVFVKLVTSYNYHPHNGCRLKKKKRIKIRTRTRKL