3300025752: Marine microbial communities from the Deep Atlantic Ocean - MMD3.0 (SPAdes)

Overview

Basic Information

• IMG/M Taxon OID: 3300025752
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0053074 | Gp0054439 | Ga0207912
• Sample Name: Marine microbial communities from the Deep Atlantic Ocean - MMD3.0 (SPAdes)
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 2864171
• Sequencing Scaffolds: 1
• Novel Protein Genes: 1
• Associated Families: 1

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Coscinodiscophyceae → Thalassiosirophycidae → Thalassiosirales	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Deep Ocean Microbial Communities From The Global Malaspina Expedition
• Type: Environmental
• Taxonomy: Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): marine biome → marine water body → sea water
• Earth Microbiome Project Ontology (EMPO): Free-living → Saline → Water (saline)

Location Information

• Location: Balearic Sea, Spain
• Coordinates
  • Lat. (^o): 40.83194
  • Long. (^o): 2.44806
  • Alt. (m): N/A
  • Depth (m): 1500

Associated Families

Family	Category	Number of Sequences	3D Structure?
F093912	Metagenome / Metatranscriptome	106	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0207912_100338	All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Coscinodiscophyceae → Thalassiosirophycidae → Thalassiosirales	696

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0207912_100338	Ga0207912_1003381	F093912	YSAGMFNLQKTQKVRQPKAIITILKALLVKIKIFRTKPVALHFNNLFFNHQSYVFKKLKKKVFVKLVTSYNYHPHNGCRLKKKKRIKIRTRTRKL