Scaffold Ga0208784_1002403

Overview

Basic Information

• Taxon OID: 3300025732
• Scaffold ID: Ga0208784_1002403
• Source Dataset Name: Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_0.19_N_>0.8_DNA (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 7436
• Total Scaffold Genes: 28
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (25.00%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (20.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Kyanoviridae (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location

• Location Name: USA: Delaware Bay
• Coordinates
  • Lat. (^o): 39.283
  • Long. (^o): -75.3633

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005089	Metagenome / Metatranscriptome	412	Y
F021974	Metagenome / Metatranscriptome	216	Y
F029725	Metagenome / Metatranscriptome	187	Y
F041726	Metagenome / Metatranscriptome	159	Y
F080645	Metagenome / Metatranscriptome	115	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208784_100240312	F029725	N/A	VISLPNPMSFTENKLTELAWFLKEKCRKDPDLLDTIISEYVWNLSESKLDELEDFLVNNFGDD
Ga0208784_100240317	F021974	N/A	MNTNIVSEIYSYHTDWKNGFVNQMWIEQSGDEYKGYSYVAVAHNPRNGSTMEMSNPRTSYSETLNWVRGFCGTFCILN
Ga0208784_100240322	F041726	N/A	MNTYRLLIEYWVPDEDENLYEERIVKSRSSCGKIADDFLAQDRTNLIRSVEVTPV
Ga0208784_10024037	F080645	N/A	MTLTSEQVSDLLTAHCNRVIDNMDMDDLVSYAVQMMMSSFDQNPGQGDTDVAMLIEDIWVAEGEDDDSTQEFIAGIVGDELAEEIVTTTQF
Ga0208784_10024038	F005089	GAG	MEHYNQLNGVVDYRLPGVCNHYFAKYDWNGERDGEITLTTKVSKTVKGQFRYTFQVNGKRIAEKQIASKFLSLGAFR