Scaffold Ga0207655_1055342

Overview

Basic Information

• Taxon OID: 3300025728
• Scaffold ID: Ga0207655_1055342
• Source Dataset Name: Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-4 metaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1571
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (85.71%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location

• Location Name: Michigan, USA
• Coordinates
  • Lat. (^o): 42.3948
  • Long. (^o): -85.3738

Associated Families

Family	Category	Number of Sequences	3D Structure?
F046806	Metagenome	150	N
F094834	Metagenome	105	Y
F104372	Metagenome	100	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0207655_10553422	F094834	AGGAG	MAHLNTCRTRKELTGNVWVYYSDPDRNCTDQSHVDAYTEETQ
Ga0207655_10553423	F046806	GAGG	MSPVSPMHAAWLVRRVCGKHVEEAPLNETGGEYVARSIRSCAALTATLGARVNPIFMHEVIRLLEELHTVHAGTHHDIRQNQALTVNNAPDLIDRLQQQISAAVNELLAHTEPLTRRAEDKVPV
Ga0207655_10553424	F104372	GAGG	MTITRASRRGAYTLPIEHGRPRTPKPGYEPISADEWAEIIHLAQQQRTEEAISAYARKRT