Scaffold Ga0209201_1000044

Overview

Basic Information

• Taxon OID: 3300025708
• Scaffold ID: Ga0209201_1000044
• Source Dataset Name: Active sludge microbial communities of municipal wastewater-treating anaerobic digesters from USA - AD_UKC055_MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 199084
• Total Scaffold Genes: 197
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 91 (46.19%)
• Novel Protein Genes: 12
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (41.67%)
• Associated Families: 12

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Engineered → Wastewater → Anaerobic Digestor → Unclassified → Unclassified → Anaerobic Digestor Sludge → Active Sludge Microbial Communities Of Municipal Wastewater-Treating Anaerobic Digesters From Various Locations

Source Dataset Sampling Location

• Location Name: USA
• Coordinates
  • Lat. (^o): 41.53
  • Long. (^o): -90.43

Associated Families

Family	Category	Number of Sequences	3D Structure?
F042481	Metagenome / Metatranscriptome	158	N
F044275	Metagenome	154	Y
F045503	Metagenome / Metatranscriptome	152	N
F046149	Metagenome	151	Y
F050854	Metagenome	144	N
F052751	Metagenome	142	N
F061699	Metagenome	131	N
F076810	Metagenome	117	N
F092530	Metagenome	107	N
F096530	Metagenome / Metatranscriptome	104	N
F098523	Metagenome	103	N
F098524	Metagenome	103	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209201_1000044122	F052751	GAGG	MFTRRQSDQAWIKYLLSSGLVTIDQLERMRANQNQVDVGELLVRNSQMFDCEVWLNQALQQDRFHYIPLGTLDERELAELQELLPTIVTRCLSEGILTLGLSCQTFYLGLLRYDPEFPELKEILHSVPAELRVCLVPVSPSDYTRLHQRLRAAASH
Ga0209201_1000044126	F042481	AGGA	MRSLPTTTTHTEANAAESRMNRPLFAFLSTLTLSTFLVERYAGWYAPGCPVTEMVSLETLRVLFFGFFAVQMLLPFYHWARDPHFTTDTASGLVLFVSIISAVVAFFIYNVPLAALNAIVRLAQFCMNS
Ga0209201_1000044134	F045503	N/A	MENMKVKLPKPAPDNQRVREIQQWLSAHGGSVANAYVVNAAALSELGAERGVIEKILWRVPREKPDMQLTAEAMMEMLTPKRLMREVRKQLKIDGKEGLAHTKAFEQSRRQLIASKVSAKTQNREAVIQEVESWFKSVLPEMRDTKAILRATELRLEAGRDIHPVSPPLNTTTEQIEQLNKREPGRVYIDKDGGELLLLKPGEQAMLDEKGLRLQNEAPAMPAPAMS
Ga0209201_1000044135	F098523	AGGAG	LGAKLKNVDLEKLRDALQKARIAFTERPVPHVNPATVSLVVQRNGYILSVTPTVYYYGAVVEIRPNGGPRICFHWNKDPAELVAVMDLLVQVRQLTARLRSRWATRQLALITGRGPGSPVLVFQPACARFGIIPRPPSFNQLHKWAAVKEYGLGTSPKIIARDLVQLYQQNTPSRSWRSVVDDWNCKYSVSFGHELTLSASYIYAWNGMRFLLDGDDLALDVWTPVSSAAFREIARLLESIQTVLGKAANEDHLKKLPSV
Ga0209201_1000044138	F096530	N/A	MSSSENGLVSFPPGTTTCCLGRNGIFTTVGIYVDSFDHKIILTPQHSRRQMARCIIELPNDSRLLLGLILELLKNSPGTLEALQQEFAQTGAPPAQE
Ga0209201_1000044147	F061699	GGA	MGHERANRGLVVSAKKPRVFETAHDAARSLRGKWQEWREAGVWFSRFHKPGTAFALPFDPGDYLWAGPVTLKLDLPKAGQTFCRKGHYRRGVRKYLSQLRRGERLPPVLLLYHEAWGWTLQDGNHRAEALAVHRAPTYEAFLGKPKRRKSIDEF
Ga0209201_1000044162	F076810	N/A	MISARTPLTITLQRQGISASLRTQARMLMTPGPGNSNPGFSLLIQAVPSGTAWFLDLAVDGRHERIFANGCGQEPDWRRNRGAPQPFTDLELAKRTAEEELGRRLNRPVCISPQVELYCPCDAQVYDYLKSDVEFTRARYDAPTDSICSVPEDCRLVSWPKGDLQRPRFHIPKDGAHIPADCRWQTICPKAHEEFLKAHNQRSGPEKAKRWLAWLISEYRKYGLNS
Ga0209201_1000044165	F044275	N/A	MADRFPIRYEIGGKIASAVFDALLEHLLAVQMTREYGGCDDEASLRKEAEQISGNSSLKVCNSELAPYLTDELDLFLVEHRLAFVKRTDARHEYGGQIEWWRPGMKHLAKWEFTNTEATEVHVSLEFLRKALGQRKTLRKVVEGLEGVAPDPGPLILLSRTPKKVCKCRRVPLANRRVTADRQGTTA
Ga0209201_1000044178	F046149	N/A	MSKQVLLNQAVLEFRGSSDLPCGITQALERKLRRADWTELLKPLLQGIPAKIRIVDVSGPERAGREPAKAGRSPRKRTFCVGITRIGYGSKTFEVSDVTAEEAARSALEQAGNHDFTEMNSEYEVLSVREKS
Ga0209201_100004479	F098524	N/A	MSESGEHQRQLEKPLIGADNPKAEVSFEGGGRELPCRAAQAVGHGDGEDEALDEESGVDPIQTLLNRRYPRIALHRDTLRLLQRVEWLNRNQGVNDFCNDAIRYVILAREAGTVTFNDLHAVSAALDARLDELNVILLHLHQAVGDLSIIVEHQRLIGAYGERLKQAAATARHK
Ga0209201_100004480	F050854	GGAGG	MDELLTLAIGKLADHYHVSEDLLKRVLLIRAVAELNALTDRTKPATPEELEAVLTNQNKRLDEVLEGFRTQLVQADNAVQSASLAVAMVERMAAILRAQVEAPAFKSPV
Ga0209201_100004493	F092530	N/A	MSRPRRISLWETVGLLSLGALTVVCLMPTLRRDYAGSGLRTSLLATIGACLIYPSAILVYTRKAISQRDGDWKITMFILGITYVLFRLVR