NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209602_1011858

Scaffold Ga0209602_1011858


Overview

Basic Information
Taxon OID3300025704 Open in IMG/M
Scaffold IDGa0209602_1011858 Open in IMG/M
Source Dataset NamePelagic marine microbial communities from North Sea - COGITO_mtgs_120524 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5044
Total Scaffold Genes13 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (46.15%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Pelagic → Unclassified → Pelagic Marine → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location
Location NameGermany:Helgoland, sampling site Kabeltonne, North Sea
CoordinatesLat. (o)54.1883Long. (o)7.9Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004343Metagenome / Metatranscriptome442Y
F008882Metagenome / Metatranscriptome326N
F013295Metagenome272N
F076030Metagenome / Metatranscriptome118N

Sequences

Protein IDFamilyRBSSequence
Ga0209602_101185812F076030N/AMDKKLPKKSNRGRKKIHFSESQLLEAERLSGLGFSEESLCKAVFGCSVSTLQRRKKEFANIEQYIRRGKMKSIEEVSAALFDSATGRNGRDPSVSAQIFFLKNKGKEAGNPWADVQQVENNINLSDIISSANARIIDHKPDTLAHDAPALDIKQINKAKNS
Ga0209602_10118582F004343N/AMGERIMTQHKQMIEEAKRLLNSKRENIPSMSKNFNKDYWLLTYPCGKIVKTYEDKRKKDVIIQESY
Ga0209602_10118585F013295AGGGGGMKINNLTPKQFARREIIKYLRDLFDNPAKYIQGFDSYTHRQQEEILRFVSLDEHRIDKLLNLPMGET
Ga0209602_10118586F008882GAGGMSVTRYNFSKPKINRQELELLNWFLAHTDDNPLINPEALDMFKANGYSAKNYQDLVNKVKTILKTYKTKGEI
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