Scaffold Ga0209771_1040672

Overview

Basic Information

• Taxon OID: 3300025701
• Scaffold ID: Ga0209771_1040672
• Source Dataset Name: Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - ESP_59LU_5_DNA (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1775
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (100.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Marine → Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean

Source Dataset Sampling Location

• Location Name: Saanich Inlet, British Columbia, Canada
• Coordinates
  • Lat. (^o): 48.6
  • Long. (^o): -123.5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F040583	Metagenome / Metatranscriptome	161	Y
F054790	Metagenome / Metatranscriptome	139	Y
F074540	Metagenome	119	N
F096774	Metagenome	104	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209771_10406721	F074540	AGGA	MLTMKTDRDTATIEGLPMGEYIEWVKKTHYAYCYNGGGRIVDEFSFAWEKNNPNMADFLGAAVNFIDYYFEENEYGHA
Ga0209771_10406723	F040583	AGGAG	MFVYLVTTNDGFVTRITTAGDPTDHPALWGRVADVETLGEADLHAV
Ga0209771_10406724	F054790	GGAG	MNDLNSAWFDIYRAFPDNAFDYVGKPFYNDNDGTIQLWNGSKMITYAEVPF
Ga0209771_10406725	F096774	GGAGG	MKTNKELNDYEFIAMNNLKRAALALTEGDYNHVEACVGEVLVCMYKVNT