Scaffold Ga0209652_1001577

Overview

Basic Information

• Taxon OID: 3300025684
• Scaffold ID: Ga0209652_1001577
• Source Dataset Name: Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - ESP_74LU_5_DNA (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 18533
• Total Scaffold Genes: 28
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (17.86%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Marine → Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean

Source Dataset Sampling Location

• Location Name: Saanich Inlet, British Columbia, Canada
• Coordinates
  • Lat. (^o): 48.6
  • Long. (^o): -123.5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F031036	Metagenome / Metatranscriptome	183	N
F049653	Metagenome / Metatranscriptome	146	N
F095415	Metagenome / Metatranscriptome	105	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209652_100157718	F049653	N/A	MASSKIYLRSQSGRAINFDQFRRELKKLGTSEEMRFREVRKLLLKEAQPLVTEARNQAYADSKGPKGISQKSRSALGAKFYNLYGSINKWANKGTEKAYVVVGLRGTRKQGAYYAPWQLFGGTSKNFKAKDFIRLAVENTDVVEKAQKLMQRHIQKRITSVLR
Ga0209652_100157724	F031036	N/A	MITANQFVTIFTGGNYAAPIWDDYAAYVAADSGTLEARDCTINAIANLL
Ga0209652_10015778	F095415	N/A	MAHEVDAQLVQQIRRAGCHQMKGDMIRWLNLHPKATALELVKHFCGTLWMSGSLEDGRYKEGQNYIK