NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209657_1070488

Scaffold Ga0209657_1070488


Overview

Basic Information
Taxon OID3300025676 Open in IMG/M
Scaffold IDGa0209657_1070488 Open in IMG/M
Source Dataset NameMarine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - SI037_S3LV_100m_DNA (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1162
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Marine → Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean

Source Dataset Sampling Location
Location NameSaanich Inlet, British Columbia, Canada
CoordinatesLat. (o)48.6Long. (o)-123.5Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F060346Metagenome133N
F090875Metagenome108N

Sequences

Protein IDFamilyRBSSequence
Ga0209657_10704881F090875AGGAMPSVLYMTPEEIELCGDRLDSVRDLLELLPNEVGSWKYAYWYKVYQYLDEKLEAAENLRCSVKE
Ga0209657_10704883F060346GGAMALDMDEIVGDSQFHKSVMYSYNERTHSFMFYTPSGDGKQIVPIGMFSPIIQEEIPYDPAALVELIADFMSREKYTFDIDVI

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