Scaffold Ga0209657_1002140

Overview

Basic Information

• Taxon OID: 3300025676
• Scaffold ID: Ga0209657_1002140
• Source Dataset Name: Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - SI037_S3LV_100m_DNA (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 11307
• Total Scaffold Genes: 15
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (46.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae → Candidatus Endolissoclinum → unclassified Candidatus Endolissoclinum → Candidatus Endolissoclinum sp. TMED37 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Marine → Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean

Source Dataset Sampling Location

• Location Name: Saanich Inlet, British Columbia, Canada
• Coordinates
  • Lat. (^o): 48.6
  • Long. (^o): -123.5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F009990	Metagenome / Metatranscriptome	310	Y
F073442	Metagenome	120	Y
F090989	Metagenome / Metatranscriptome	108	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209657_100214013	F073442	N/A	MTLPSDTYFKKGVNIHVFIEHMQRNFILTDLMKTGENALYEQFINMHSLKDQTFDFTSEYYMLQHYDLDSYDRKFAVIDRSKIGEQHPSHSTEYRQELERRRTLLHSQGFTFILATPWESQANIDEMTLYPKQTDEMVWSGGVSWFWFYMYNKHKNSKFNFDHSSKKYDFLYLNKQPRAHRVKLYNKLFDNGILENSLHTNWPDRKLPAEYELPWAQDYPQYGMDQDIYERPYNDTACSIVSETNDNNSGIFMTEKIWKPIIAQQLFVVHGNHLYLQKLREMGFRTFNNYFEEAYDLDRDPDIRINTIVDVCDRLRDAPWQDIYLQSKALRQNNYDKFFHKENLSNEINKTLNLFLEFADTRQVSS
Ga0209657_100214014	F009990	N/A	MSQNKDTQIFAKAYADQTMAKGTFDQVRMINNDLSNMLAIVSGDPEITKKLKNKDEAQAMRQRQPVPVMALRRYMRTWEDHFKNLTHLERALNITDANLKNIRRAVANYNSLNSKMKMQTLHRLQQQLQSKLPNTDILKKFKEL
Ga0209657_100214015	F090989	GAG	VGANSTVNNLVQSAGTVQTVHVKNVMPETNSFWVLYGQHTEPTYLEDAG