Scaffold Ga0209657_1000979

Overview

Basic Information

• Taxon OID: 3300025676
• Scaffold ID: Ga0209657_1000979
• Source Dataset Name: Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - SI037_S3LV_100m_DNA (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 17852
• Total Scaffold Genes: 35
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 31 (88.57%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Marine → Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean

Source Dataset Sampling Location

• Location Name: Saanich Inlet, British Columbia, Canada
• Coordinates
  • Lat. (^o): 48.6
  • Long. (^o): -123.5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005743	Metagenome / Metatranscriptome	391	Y
F018266	Metagenome / Metatranscriptome	236	N
F027901	Metagenome	193	Y
F050676	Metagenome / Metatranscriptome	145	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209657_100097924	F005743	AGGAG	MTRNLIVYKVDYVNRHEDYNTQTGRFVRTKRIVMTPDEVDQKDGYWRNHRNVEKKFSKQMNGKEDAYWDCKYRVMRVRKAXQIK
Ga0209657_100097925	F027901	GAGG	MTDKVDCAIWIWDNEMQRKKRIRLQTLLNRVNHTLRHENITYFALEKDRNKFAKEFKXKKLKHLNIGQLKHGQSICYG
Ga0209657_100097926	F018266	GAGG	MFRVILEGKFRENPINLSRAVKLLYNQDFTGSIRKENILWWKKYFLKVIHLPILYPKRGYIQIVKIYRDKKPSIRVVTIPTSSDKRELLVLNKIYGGNNG
Ga0209657_100097930	F050676	GGAGG	METKLPVKSRVADKYQPMLTYYAELIGLCHETVAKTQSLKMLDPMGKKTTATSLFIRVCQRMDKSIDAKEVAEKLETISKTNEQRSHVAXVVVKHPYDKMKKTI