NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208162_1013716

Scaffold Ga0208162_1013716


Overview

Basic Information
Taxon OID3300025674 Open in IMG/M
Scaffold IDGa0208162_1013716 Open in IMG/M
Source Dataset NameFreshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1508_1M Viral MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3297
Total Scaffold Genes9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (11.11%)
Novel Protein Genes7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families7

Taxonomy
All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → Verrucomicrobiaceae → unclassified Verrucomicrobiaceae → Verrucomicrobiaceae bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location
Location NameUSA: Chesapeake Bay
CoordinatesLat. (o)38.9819Long. (o)-76.3716Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001018Metagenome / Metatranscriptome804Y
F002738Metagenome / Metatranscriptome533Y
F006619Metagenome / Metatranscriptome368Y
F008128Metagenome / Metatranscriptome338Y
F013517Metagenome / Metatranscriptome270Y
F025982Metagenome / Metatranscriptome199Y
F038646Metagenome165Y

Sequences

Protein IDFamilyRBSSequence
Ga0208162_10137161F006619N/ASCEPTCSCGSFQRQLNNLSTFQEEIQGFKPWCIHLTWFAKYRELLCKRTEVRNASPSGTPEKCVAWWYAPPSDHNSDGRFLLLHTKSGAQAPLSHWRTYKPSEVFTQHHAWALFFNMMEAGYTPFPGTSLPQLKNAFKK
Ga0208162_10137162F038646N/AMTERFSMQAPDDILEYARQLAADQPMKIPDHHSYHLDIPNDLHWELVRLGAELKMDYEVYAEEVLKAHAEDAISRRIVAKAYNDPRWVTKLKLECIDEPDGTMTIHIEWDEKDPDLLYWTNLGAKGQENFILTALRSACESVLSDHDD
Ga0208162_10137163F002738N/AMTIDTYGLTFDQYEEFFDKNIRLAAKLYLKANTIVVEEGVTHADFKTLLDLYQEAVYATNDDCRRYQRSNNPEALKEATTDIFGITPTREELMEEIQSVNAKVEALTDYVAKLVEITTNGLNGVVKTLEG
Ga0208162_10137164F013517N/AMFETLFVTVLPVFKDLLWAAAGMLLTYVLNKFQSQFN
Ga0208162_10137165F001018N/AMSQITQAKLKDLSVIKLYEHYAALEKSLPLLTPESQELAQAELESCANLRSEKIDRIYYAMAAHEDALERIKKEGDLITQAKRHHESQLRSLKGLLNYLRRVLPLDSNKITGRNYQFTLVKKKELTVEVSSDPEFWHSKERELYCVTEEVTTTKRVVLRSMSGEILDERIEPKSTTKVLPSLDAIRNAYQEGQQLPHGVKVLQEYSVRSKRIFAEPKLDLAPSEYPTELLREDSSAD
Ga0208162_10137166F025982N/AMNCHEHAIKDFDLQLEMNGLQMEMLMENNKVLDYHMAEYEDLEQKKLKLLIGKRFHQNASHAYWYYLQREKSGK
Ga0208162_10137168F008128N/AMEPVYVPKLTVSFAVDLEVEYNSFGGKTADEIAEALQDDLDDLLFELGHVTGVCTSCTSIEFND

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