Scaffold Ga0208162

Basic Information
Taxon OID	3300025674 Open in IMG/M
Scaffold ID	Ga0208162_1013444 Open in IMG/M
Source Dataset Name	Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1508_1M Viral MetaG (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300025674 Open in IMG/M

Scaffold ID

Ga0208162_1013444 Open in IMG/M

Source Dataset Name

Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1508_1M Viral MetaG (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	3341
Total Scaffold Genes	10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (20.00%)
Novel Protein Genes	5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (40.00%)
Associated Families	5

Scaffold Components

Scaffold Length (bps)

3341

Total Scaffold Genes

10 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

2 (20.00%)

Novel Protein Genes

5 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

2 (40.00%)

Associated Families

Taxonomy
All Organisms → Viruses → Predicted Viral	(Source: DeepVirFinder)

Taxonomy

All Organisms → Viruses → Predicted Viral

(Source: DeepVirFinder)

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location
Location Name	USA: Chesapeake Bay
Coordinates	Lat. (^o)	38.9819	Long. (^o)	-76.3716	Alt. (m)	Depth (m)
Location on Map

Zoom:	Powered by OpenStreetMap^©

Source Dataset Sampling Location

Location Name

USA: Chesapeake Bay

Coordinates

Lat. (^o)

38.9819

Long. (^o)

-76.3716

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003106	Metagenome / Metatranscriptome	507	N
F012662	Metagenome / Metatranscriptome	278	N
F054687	Metagenome / Metatranscriptome	139	Y
F073285	Metagenome	120	Y
F091843	Metagenome / Metatranscriptome	107	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208162_101344410	F003106	GAG	MSDTRGHVWRMREWGRAQYRNRQAKLRAEGESSQTEASKRMLRVMAPKLGKKVEDFMYTFGGNTEHTTPLFLTFILDMCPYQVAASALQTFLDHLQFNLPVGRMAYKIGKAFENQARWDKALETMHPNKLDLLALDDRSKAMKLKQFYDYEEERFTLWDSKCKTALGAWLLEEIRTETGLFEIGFNTGGQKSYKPERLVLPTSQFKDWIRRFDAWKETTRVFKMALPDRPVDWYGLVGGGYSVKHMPPQKFITGKPVEWF
Ga0208162_10134442	F073285	N/A	MKLKYLLIGANSKHDEIVKIFKGDTSIDVINQHLKSYLSEIDCLQDLTDRFDDIKKTNGIDDTFHVIKYYLMETRDTFVTIEDTELCQ
Ga0208162_10134443	F091843	N/A	MSVTEYLTDHNGNRVAFFYYIDSERYSVAPKLVWQCRDYPNFSGTCASKEEAFEAFKSVLKELKKKAKTCDTCGLTSPKMEAQLTCPDCLTETTTNK
Ga0208162_10134445	F054687	GGAG	VSKDFLGMNDLCDASLEALIQHYLSVQKRLPDNVRVRDRLIELQQELLSRQPSTIEGMIRQTTENPIQ
Ga0208162_10134446	F012662	N/A	MKETLLQPADMIEELMYHILWNEFDGELNPDHKYFPLYLSLQQLLEDETKRLEE

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0208162_1013444

Overview

Ecosystem & Geography

Associated Families

Sequences