Scaffold Ga0208162_1006343

Overview

Basic Information

• Taxon OID: 3300025674
• Scaffold ID: Ga0208162_1006343
• Source Dataset Name: Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1508_1M Viral MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5360
• Total Scaffold Genes: 13
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (30.77%)
• Novel Protein Genes: 7
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (14.29%)
• Associated Families: 7

Taxonomy: All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → Verrucomicrobiaceae → unclassified Verrucomicrobiaceae → Verrucomicrobiaceae bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location

• Location Name: USA: Chesapeake Bay
• Coordinates
  • Lat. (^o): 38.9819
  • Long. (^o): -76.3716

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001018	Metagenome / Metatranscriptome	804	Y
F002738	Metagenome / Metatranscriptome	533	Y
F008128	Metagenome / Metatranscriptome	338	Y
F013517	Metagenome / Metatranscriptome	270	Y
F025982	Metagenome / Metatranscriptome	199	Y
F038646	Metagenome	165	Y
F041147	Metagenome / Metatranscriptome	160	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208162_100634310	F008128	N/A	LIDIAFTATVIAPLQQGMEPVYKTKLTVSFAIDLEVEYNSFGGKTVDEIAEALQDDLDDLLFELPHVEGVYTTLTNLGFND
Ga0208162_100634312	F041147	N/A	MDTTNEPIDAISKWQEWYRKHRIVAEMDEPLVTKDSRENMHDTSKATTTLDGSDNLLTDYCKAMSFQKAKEYFADTIAEFTNELSGKELYKAFYAAAMDNMDCVEKEYNKAKQLVDMLRCNNVAP
Ga0208162_10063432	F038646	N/A	MTDDILEYARQLVANQPMKTPEHYNYHLDIPNDLHWELVRLGAELKMDYEVYAEEVLKMHAEDAISRRITAKAYNDPSWVTKLKLDCIDEPDGTMNIQIEWDEKDPDLLYWTNLGPKGQENFILTALRSACEAVLPDHGN
Ga0208162_10063433	F002738	N/A	MAIDTYGLPSEQYEEFFEKNVRLAAKLYLKTCNIFNEEGAGHVDFKTILDIYQETVYAANDDCRRYQKSNNPEALKDGDLYNISPTREEIMEEVQSVNAKVEALTDYISNLVTVTTAGLEGIATTLDDKVD
Ga0208162_10063434	F013517	N/A	MFESLLSAVLPVMKDLLWAAAGMLLTYVLNKVQSQFN
Ga0208162_10063435	F001018	N/A	MAQITQAKLKELNVIKLYEHYAALEKSLPLLTPESQELAKAELESCANLRSEKIDRIYYAMASHEDALERIKKEGELITQAKRHHESQLRSLKNLLNYLRRVLPQDSNKITGRNYQFTLVKKKELTVEISTDPEFWHTKERELYCVTEEVTTTKRVVLRSMSGEVLSERTEPKTTTKTLPNLDAIRSAYQEGQQLPNGVKVIQEYSVRSKRIFSEPKLDLVPSEYPGELLPEDSSTD
Ga0208162_10063436	F025982	AGAAG	MSCHEHAIKDFDLQLEMNGLQMEMLMEDGKVLDYHMDEYEDLEQKKLKLLVGKRFHQNACNAYWYWMQREKSGK