Scaffold Ga0209494_1012342

Overview

Basic Information

• Taxon OID: 3300025673
• Scaffold ID: Ga0209494_1012342
• Source Dataset Name: Methane-oxidizing microbial communities from mesocosms in the Hudson Canyon - EN1B Hudson Canyon (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3240
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (87.50%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Methane Seep Mesocosm → Methane-Oxidizing Microbial Communities From Mesocosms In The Gulf Of Mexico And Hudson Canyon, Usa

Source Dataset Sampling Location

• Location Name: Hudson Canyon
• Coordinates
  • Lat. (^o): 39.55
  • Long. (^o): -72.4

Associated Families

Family	Category	Number of Sequences	3D Structure?
F087020	Metagenome / Metatranscriptome	110	N
F090865	Metagenome	108	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209494_10123421	F087020	N/A	LMSYAEWVERYKGKQIDEVILEDHKVYLRQFKAWQIGNIKRV
Ga0209494_10123423	F090865	GGAG	MNKIHIFSSPRSGTHYLESLINRMLDISIVPTPFEERNAFNIDTKELSNKINEFNSIDSLVCKTHPNWLFPYDTSVEQFKYLREPDSDMLPLIQQFTEENDYTLGVIRLNIVDVTLSFALAYHNFRLTGDGTGSFRPPYNNKTVSISMEYFVENCNKILAIYEVMIAQKEIKCDKIIYYEDLAFDSTDAKLIGITPIHTFESSIKQAKSKKETITNYDELREYAIKFFSRHQWSMKITDGVITDMDLSNLKRRK