NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Metagenome / Metatranscriptome Family F087020

Metagenome / Metatranscriptome Family F087020

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
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Overview

Basic Information
Family ID F087020
Family Type Metagenome / Metatranscriptome
Number of Sequences 110
Average Sequence Length 46 residues
Representative Sequence KHLMSYAEWVERYKGKQIDEVILEDHKVYLKQFKAWQIGNIERV
Number of Associated Samples 90
Number of Associated Scaffolds 110

Quality Assessment
Transcriptomic Evidence Yes
Most common taxonomic group Unclassified
% of genes with valid RBS motifs 3.64 %
% of genes near scaffold ends (potentially truncated) 41.82 %
% of genes from short scaffolds (< 2000 bps) 65.45 %
Associated GOLD sequencing projects 79
AlphaFold2 3D model prediction No

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
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Most Common Taxonomy
Group Unclassified (60.909 % of family members)
NCBI Taxonomy ID N/A
Taxonomy N/A

Most Common Ecosystem
GOLD Ecosystem Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine
(29.091 % of family members)
Environment Ontology (ENVO) Unclassified
(54.545 % of family members)
Earth Microbiome Project Ontology (EMPO) Free-living → Saline → Water (saline)
(94.545 % of family members)



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Multiple Sequence Alignments

Select alignment to view:      


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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Globular Signal Peptide: No Secondary Structure distribution: α-helix: 59.09%    β-sheet: 0.00%    Coil/Unstructured: 40.91%
Feature Viewer
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Gene Neighborhood

Neighboring Pfam domains

Pfam IDName % Frequency in 110 Family Scaffolds
PF11026DUF2721 9.09
PF01583APS_kinase 7.27
PF13186SPASM 5.45
PF08534Redoxin 4.55
PF01592NifU_N 3.64
PF04055Radical_SAM 3.64
PF01521Fe-S_biosyn 1.82
PF13671AAA_33 0.91
PF02511Thy1 0.91
PF14572Pribosyl_synth 0.91
PF05992SbmA_BacA 0.91
PF01197Ribosomal_L31 0.91
PF02543Carbam_trans_N 0.91
PF030614HBT 0.91

Neighboring Clusters of Orthologous Genes (COGs)

COG IDNameFunctional Category % Frequency in 110 Family Scaffolds
COG0529Adenylylsulfate kinase or related kinaseInorganic ion transport and metabolism [P] 7.27
COG0822Fe-S cluster assembly scaffold protein IscU, NifU familyPosttranslational modification, protein turnover, chaperones [O] 3.64
COG0316Fe-S cluster assembly iron-binding protein IscAPosttranslational modification, protein turnover, chaperones [O] 1.82
COG4841Uncharacterized conserved protein YneR, related to HesB/YadR/YfhF familyFunction unknown [S] 1.82
COG0254Ribosomal protein L31Translation, ribosomal structure and biogenesis [J] 0.91
COG1351Thymidylate synthase ThyX, FAD-dependent familyNucleotide transport and metabolism [F] 0.91
COG2192Predicted carbamoyl transferase, NodU familyGeneral function prediction only [R] 0.91


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Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:
NameRankTaxonomyDistribution
UnclassifiedrootN/A60.91 %
All OrganismsrootAll Organisms39.09 %

Visualization
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Associated Scaffolds


ScaffoldTaxonomyLengthIMG/M Link
3300000928|OpTDRAFT_10087655Not Available540Open in IMG/M
3300000930|BpDRAFT_10005150All Organisms → Viruses → Predicted Viral1588Open in IMG/M
3300003478|JGI26238J51125_1057474All Organisms → cellular organisms → Bacteria784Open in IMG/M
3300003937|Ga0063391_1002184Not Available27772Open in IMG/M
3300005941|Ga0070743_10174619Not Available709Open in IMG/M
3300005951|Ga0066379_10162976Not Available713Open in IMG/M
3300006011|Ga0066373_10089383All Organisms → cellular organisms → Bacteria → Proteobacteria868Open in IMG/M
3300006752|Ga0098048_1002197All Organisms → cellular organisms → Bacteria8224Open in IMG/M
3300006752|Ga0098048_1014567All Organisms → Viruses → Predicted Viral2709Open in IMG/M
3300006752|Ga0098048_1180550Not Available626Open in IMG/M
3300006789|Ga0098054_1116625All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales → unclassified Rhodobacterales → Rhodobacterales bacterium HTCC2255995Open in IMG/M
3300006789|Ga0098054_1127549Not Available945Open in IMG/M
3300006793|Ga0098055_1056182All Organisms → Viruses → Predicted Viral1578Open in IMG/M
3300006793|Ga0098055_1170126All Organisms → cellular organisms → Bacteria834Open in IMG/M
3300006793|Ga0098055_1275984Not Available630Open in IMG/M
3300006902|Ga0066372_10014948All Organisms → Viruses → Predicted Viral3481Open in IMG/M
3300006902|Ga0066372_10288593Not Available924Open in IMG/M
3300006924|Ga0098051_1065507Not Available992Open in IMG/M
3300006925|Ga0098050_1030183Not Available1474Open in IMG/M
3300006925|Ga0098050_1118396Not Available673Open in IMG/M
3300006947|Ga0075444_10236494Not Available724Open in IMG/M
3300007513|Ga0105019_1000115Not Available127168Open in IMG/M
3300007514|Ga0105020_1007697Not Available11626Open in IMG/M
3300007557|Ga0102821_1158701Not Available575Open in IMG/M
3300007558|Ga0102822_1009077All Organisms → Viruses → Predicted Viral2528Open in IMG/M
3300007665|Ga0102908_1136447Not Available508Open in IMG/M
3300007681|Ga0102824_1065997Not Available951Open in IMG/M
3300007692|Ga0102823_1015240All Organisms → cellular organisms → Bacteria2168Open in IMG/M
3300008253|Ga0105349_10007130All Organisms → Viruses → Predicted Viral4741Open in IMG/M
3300008253|Ga0105349_10009882All Organisms → Viruses → Predicted Viral4048Open in IMG/M
3300009003|Ga0102813_1037913Not Available1689Open in IMG/M
3300009059|Ga0102830_1189791Not Available601Open in IMG/M
3300009079|Ga0102814_10454705All Organisms → cellular organisms → Bacteria697Open in IMG/M
3300009080|Ga0102815_10776481Not Available544Open in IMG/M
3300009420|Ga0114994_10035735All Organisms → Viruses → Predicted Viral3464Open in IMG/M
3300009420|Ga0114994_10212031All Organisms → Viruses → Predicted Viral1302Open in IMG/M
3300009420|Ga0114994_10725072Not Available648Open in IMG/M
3300009436|Ga0115008_10014075Not Available6529Open in IMG/M
3300009436|Ga0115008_10839206Not Available675Open in IMG/M
3300009606|Ga0115102_10785620Not Available1173Open in IMG/M
3300009705|Ga0115000_10161792All Organisms → Viruses → Predicted Viral1488Open in IMG/M
3300017751|Ga0187219_1174400Not Available607Open in IMG/M
3300017776|Ga0181394_1063439Not Available1222Open in IMG/M
3300020358|Ga0211689_1161608Not Available619Open in IMG/M
3300020375|Ga0211656_10013230All Organisms → cellular organisms → Bacteria → Proteobacteria3057Open in IMG/M
3300020376|Ga0211682_10012991All Organisms → Viruses → Predicted Viral3422Open in IMG/M
3300020435|Ga0211639_10183292Not Available870Open in IMG/M
3300021065|Ga0206686_1010509All Organisms → Viruses → Predicted Viral2621Open in IMG/M
3300021068|Ga0206684_1274048Not Available527Open in IMG/M
3300021084|Ga0206678_10083729All Organisms → Viruses → Predicted Viral1671Open in IMG/M
3300021089|Ga0206679_10136927Not Available1401Open in IMG/M
3300021185|Ga0206682_10000238Not Available58848Open in IMG/M
3300021375|Ga0213869_10001677Not Available16120Open in IMG/M
3300021375|Ga0213869_10175523Not Available982Open in IMG/M
3300021957|Ga0222717_10162713All Organisms → cellular organisms → Bacteria1350Open in IMG/M
3300021957|Ga0222717_10354620Not Available823Open in IMG/M
(restricted) 3300022931|Ga0233433_10152731Not Available1058Open in IMG/M
(restricted) 3300023210|Ga0233412_10436268Not Available589Open in IMG/M
3300024180|Ga0228668_1088027Not Available563Open in IMG/M
3300024226|Ga0228667_1028383Not Available1118Open in IMG/M
3300024228|Ga0228633_1010717Not Available2657Open in IMG/M
3300024229|Ga0233402_1002593Not Available5256Open in IMG/M
3300024229|Ga0233402_1009496All Organisms → Viruses → Predicted Viral2268Open in IMG/M
3300024231|Ga0233399_1011521All Organisms → Viruses → Predicted Viral2881Open in IMG/M
3300024235|Ga0228665_1014973Not Available1570Open in IMG/M
3300024236|Ga0228655_1004659All Organisms → Viruses → Predicted Viral3865Open in IMG/M
3300024236|Ga0228655_1016359Not Available1895Open in IMG/M
3300024291|Ga0228660_1043953All Organisms → cellular organisms → Bacteria852Open in IMG/M
3300024297|Ga0228658_1090073Not Available762Open in IMG/M
3300024314|Ga0228657_1042269Not Available1004Open in IMG/M
3300024321|Ga0228626_1110736Not Available586Open in IMG/M
3300024343|Ga0244777_10043993All Organisms → Viruses → Predicted Viral2851Open in IMG/M
3300024346|Ga0244775_10031698All Organisms → Viruses → Predicted Viral4706Open in IMG/M
3300024346|Ga0244775_10824920All Organisms → cellular organisms → Bacteria740Open in IMG/M
3300025084|Ga0208298_1025318Not Available1278Open in IMG/M
3300025098|Ga0208434_1007031Not Available3381Open in IMG/M
3300025108|Ga0208793_1000835Not Available19276Open in IMG/M
3300025108|Ga0208793_1010690All Organisms → Viruses → Predicted Viral3621Open in IMG/M
3300025108|Ga0208793_1012468All Organisms → cellular organisms → Bacteria3265Open in IMG/M
3300025673|Ga0209494_1003091Not Available7075Open in IMG/M
3300025673|Ga0209494_1012342All Organisms → cellular organisms → Bacteria3240Open in IMG/M
3300025676|Ga0209657_1104722All Organisms → cellular organisms → Bacteria863Open in IMG/M
3300025688|Ga0209140_1221278Not Available521Open in IMG/M
3300025719|Ga0209252_1107582Not Available942Open in IMG/M
3300025770|Ga0209362_1035242All Organisms → Viruses → Predicted Viral2240Open in IMG/M
3300026483|Ga0228620_1002534Not Available6708Open in IMG/M
3300027048|Ga0208962_1008316Not Available1679Open in IMG/M
3300027188|Ga0208921_1049008Not Available619Open in IMG/M
3300027197|Ga0208922_1011210Not Available1713Open in IMG/M
3300027198|Ga0208163_1069788Not Available560Open in IMG/M
3300027228|Ga0208308_1050189Not Available560Open in IMG/M
3300027413|Ga0208950_1099299Not Available615Open in IMG/M
3300027677|Ga0209019_1054694All Organisms → Viruses → Predicted Viral1238Open in IMG/M
3300027753|Ga0208305_10029314All Organisms → Viruses → Predicted Viral2198Open in IMG/M
3300027801|Ga0209091_10014944All Organisms → cellular organisms → Bacteria5205Open in IMG/M
3300027801|Ga0209091_10409717Not Available612Open in IMG/M
3300027813|Ga0209090_10011005All Organisms → cellular organisms → Bacteria5444Open in IMG/M
3300027827|Ga0209035_10017317All Organisms → Viruses → Predicted Viral3329Open in IMG/M
3300027833|Ga0209092_10000896Not Available30198Open in IMG/M
3300028126|Ga0228648_1068728Not Available668Open in IMG/M
3300028129|Ga0228634_1127178Not Available530Open in IMG/M
3300028192|Ga0257107_1058926Not Available1177Open in IMG/M
3300028280|Ga0228646_1050418All Organisms → Viruses → Predicted Viral1031Open in IMG/M
3300028284|Ga0257120_1050218All Organisms → cellular organisms → Bacteria1078Open in IMG/M
3300028287|Ga0257126_1206649Not Available609Open in IMG/M
3300028414|Ga0228627_1050494Not Available1118Open in IMG/M
3300031886|Ga0315318_10078224All Organisms → Viruses → Predicted Viral1808Open in IMG/M
3300032130|Ga0315333_10198628Not Available950Open in IMG/M
3300032360|Ga0315334_10573765Not Available971Open in IMG/M
3300034695|Ga0372840_009919All Organisms → Viruses → Predicted Viral2588Open in IMG/M

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).



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Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:
HabitatTaxonomyDistribution
MarineEnvironmental → Aquatic → Marine → Oceanic → Unclassified → Marine29.09%
SeawaterEnvironmental → Aquatic → Marine → Coastal → Unclassified → Seawater18.18%
EstuarineEnvironmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine13.64%
SeawaterEnvironmental → Aquatic → Marine → Intertidal Zone → Unclassified → Seawater7.27%
MarineEnvironmental → Aquatic → Marine → Intertidal Zone → Unclassified → Marine6.36%
MarineEnvironmental → Aquatic → Marine → Unclassified → Unclassified → Marine5.45%
Methane Seep MesocosmEnvironmental → Aquatic → Marine → Unclassified → Unclassified → Methane Seep Mesocosm3.64%
EstuarineEnvironmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine2.73%
MarineEnvironmental → Aquatic → Marine → Inlet → Unclassified → Marine1.82%
SeawaterEnvironmental → Aquatic → Marine → Inlet → Unclassified → Seawater1.82%
MarineEnvironmental → Aquatic → Marine → Coastal → Unclassified → Marine1.82%
Estuarine WaterEnvironmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water1.82%
Freshwater And MarineEnvironmental → Aquatic → Marine → Neritic Zone → Unclassified → Freshwater And Marine1.82%
SeawaterEnvironmental → Aquatic → Marine → Strait → Unclassified → Seawater1.82%
SeawaterEnvironmental → Aquatic → Marine → Oceanic → Unclassified → Seawater0.91%
MarineEnvironmental → Aquatic → Marine → Oceanic → Unclassified → Marine0.91%
MarineEnvironmental → Aquatic → Marine → Oceanic → Aphotic Zone → Marine0.91%

Visualization
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Associated Samples

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Taxon OIDSample NameHabitat TypeIMG/M Link
3300000928Marine plume microbial communities from the Columbia River - 25 PSUEnvironmentalOpen in IMG/M
3300000930Marine microbial communities from the coastal margin of the Columbia River, USA - 33 PSU, 16mEnvironmentalOpen in IMG/M
3300003478Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - SI037_S3LV_100m_DNAEnvironmentalOpen in IMG/M
3300003937SPOT_150m_metagenome_yearEnvironmentalOpen in IMG/M
3300005941Estuarine microbial communities from the Columbia River estuary, USA - metaG S.697EnvironmentalOpen in IMG/M
3300005951Seawater microbial communities from Saanich Inlet, British Columbia, Canada - Knorr_S23_td_250_ad_251m_LV_AEnvironmentalOpen in IMG/M
3300006011Seawater microbial communities from Saanich Inlet, British Columbia, Canada - Knorr_S15_td_O2min_ad_340m_LVEnvironmentalOpen in IMG/M
3300006752Marine viral communities from the Subarctic Pacific Ocean - 13_ETSP_OMZ_AT15268 metaGEnvironmentalOpen in IMG/M
3300006789Marine viral communities from the Subarctic Pacific Ocean - 16_ETSP_OMZ_AT15313 metaGEnvironmentalOpen in IMG/M
3300006793Marine viral communities from the Subarctic Pacific Ocean - 17_ETSP_OMZ_AT15314 metaGEnvironmentalOpen in IMG/M
3300006902Seawater microbial communities from Saanich Inlet, British Columbia, Canada - Knorr_S15_td_250_ad_251m_LV_AEnvironmentalOpen in IMG/M
3300006924Marine viral communities from the Subarctic Pacific Ocean - 14B_ETSP_OMZ_AT15311_CsCl metaGEnvironmentalOpen in IMG/M
3300006925Marine viral communities from the Subarctic Pacific Ocean - 14_ETSP_OMZ_AT15311 metaGEnvironmentalOpen in IMG/M
3300006947Marine microbial communities from the West Antarctic Peninsula - Coastal water metaG017-DNAEnvironmentalOpen in IMG/M
3300007513Marine water column microbial communities of the permanently stratified Cariaco Basin, Venezuela, November cruise - 237m, 250-2.7um, replicate bEnvironmentalOpen in IMG/M
3300007514Marine water column microbial communities of the permanently stratified Cariaco Basin, Venezuela, November cruise - 143m, 2.7-0.2um, replicate aEnvironmentalOpen in IMG/M
3300007557Estuarine microbial communities from the Columbia River estuary - Ebb tide non-ETM metaG S.715EnvironmentalOpen in IMG/M
3300007558Estuarine microbial communities from the Columbia River estuary - Flood tide non-ETM metaG S.733EnvironmentalOpen in IMG/M
3300007665Estuarine microbial communities from the Columbia River estuary - metaG 1557A-3EnvironmentalOpen in IMG/M
3300007681Estuarine microbial communities from the Columbia River estuary - Ebb tide non-ETM metaG S.753EnvironmentalOpen in IMG/M
3300007692Estuarine microbial communities from the Columbia River estuary - Ebb tide non-ETM metaG S.743EnvironmentalOpen in IMG/M
3300008253Methane-oxidizing microbial communities from mesocosms in the Hudson Canyon - EN1B Hudson CanyonEnvironmentalOpen in IMG/M
3300009003Estuarine microbial communities from the Columbia River estuary - Flood tide ETM metaG S.725EnvironmentalOpen in IMG/M
3300009059Estuarine microbial communities from the Columbia River estuary - Freshwater metaG S.703EnvironmentalOpen in IMG/M
3300009079Estuarine microbial communities from the Columbia River estuary - Flood tide ETM metaG S.741EnvironmentalOpen in IMG/M
3300009080Estuarine microbial communities from the Columbia River estuary - Ebb tide ETM metaG S.759EnvironmentalOpen in IMG/M
3300009420Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB2_152EnvironmentalOpen in IMG/M
3300009436Marine eukaryotic phytoplankton communities from Arctic Ocean - Fram Strait ARC3M MetagenomeEnvironmentalOpen in IMG/M
3300009606Marine eukaryotic communities from Pacific Ocean to study complex ecological interactions - MBTS_5May14_M2_3um Metatranscriptome (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300009705Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB8_128EnvironmentalOpen in IMG/M
3300017751Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 13 SPOT_SRF_2010-07-21 (version 2)EnvironmentalOpen in IMG/M
3300017776Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 17 SPOT_SRF_2010-11-23EnvironmentalOpen in IMG/M
3300020358Marine microbial communities from Tara Oceans - TARA_B100000768 (ERX555925-ERR599009)EnvironmentalOpen in IMG/M
3300020375Marine microbial communities from Tara Oceans - TARA_B100000953 (ERX555974-ERR599132)EnvironmentalOpen in IMG/M
3300020376Marine microbial communities from Tara Oceans - TARA_B100000795 (ERX555997-ERR599121)EnvironmentalOpen in IMG/M
3300020435Marine microbial communities from Tara Oceans - TARA_B100000586 (ERX556070-ERR599086)EnvironmentalOpen in IMG/M
3300021065Ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M2 500m 12015EnvironmentalOpen in IMG/M
3300021068Ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M2 100m 12015EnvironmentalOpen in IMG/M
3300021084Ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M1 80m 12015EnvironmentalOpen in IMG/M
3300021089Ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M1 100m 12015EnvironmentalOpen in IMG/M
3300021185Ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M2 40m 12015EnvironmentalOpen in IMG/M
3300021375Coastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO132EnvironmentalOpen in IMG/M
3300021957Estuarine water microbial communities from San Francisco Bay, California, United States - C33_18DEnvironmentalOpen in IMG/M
3300022931 (restricted)Seawater microbial communities from Saanich Inlet, British Columbia, Canada - SI_122_August2016_100_MGEnvironmentalOpen in IMG/M
3300023210 (restricted)Seawater microbial communities from Saanich Inlet, British Columbia, Canada - Na_anoxic_4_MGEnvironmentalOpen in IMG/M
3300024180Seawater microbial communities from Monterey Bay, California, United States - 82DEnvironmentalOpen in IMG/M
3300024226Seawater microbial communities from Monterey Bay, California, United States - 81DEnvironmentalOpen in IMG/M
3300024228Seawater microbial communities from Monterey Bay, California, United States - 41DEnvironmentalOpen in IMG/M
3300024229Seawater microbial communities from Monterey Bay, California, United States - 54DEnvironmentalOpen in IMG/M
3300024231Seawater microbial communities from Monterey Bay, California, United States - 43DEnvironmentalOpen in IMG/M
3300024235Seawater microbial communities from Monterey Bay, California, United States - 79DEnvironmentalOpen in IMG/M
3300024236Seawater microbial communities from Monterey Bay, California, United States - 67DEnvironmentalOpen in IMG/M
3300024291Seawater microbial communities from Monterey Bay, California, United States - 74DEnvironmentalOpen in IMG/M
3300024297Seawater microbial communities from Monterey Bay, California, United States - 71DEnvironmentalOpen in IMG/M
3300024314Seawater microbial communities from Monterey Bay, California, United States - 70DEnvironmentalOpen in IMG/M
3300024321Seawater microbial communities from Monterey Bay, California, United States - 31DEnvironmentalOpen in IMG/M
3300024343Combined assembly of estuarine microbial communities from Columbia River, Washington, USA >3um size fractionEnvironmentalOpen in IMG/M
3300024346Whole water sample coassemblyEnvironmentalOpen in IMG/M
3300025084Marine viral communities from the Subarctic Pacific Ocean - 14B_ETSP_OMZ_AT15311_CsCl metaG (SPAdes)EnvironmentalOpen in IMG/M
3300025098Marine viral communities from the Subarctic Pacific Ocean - 13_ETSP_OMZ_AT15268 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300025108Marine viral communities from the Subarctic Pacific Ocean - 17_ETSP_OMZ_AT15314 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300025673Methane-oxidizing microbial communities from mesocosms in the Hudson Canyon - EN1B Hudson Canyon (SPAdes)EnvironmentalOpen in IMG/M
3300025676Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - SI037_S3LV_100m_DNA (SPAdes)EnvironmentalOpen in IMG/M
3300025688Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - SI073_LV_120m_DNA (SPAdes)EnvironmentalOpen in IMG/M
3300025719Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - SI074_LV_135m_DNA (SPAdes)EnvironmentalOpen in IMG/M
3300025770Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - SI072_LV_165m_DNA (SPAdes)EnvironmentalOpen in IMG/M
3300026483Seawater microbial communities from Monterey Bay, California, United States - 23DEnvironmentalOpen in IMG/M
3300027048Ammonia-oxidizing marine microbial communities from Monterey Bay, California, USA - C0912_C43A7_80 (SPAdes)EnvironmentalOpen in IMG/M
3300027188Estuarine microbial communities from the Columbia River estuary - Ebb tide non-ETM metaG S.709 (SPAdes)EnvironmentalOpen in IMG/M
3300027197Estuarine microbial communities from the Columbia River estuary - Ebb tide non-ETM metaG S.743 (SPAdes)EnvironmentalOpen in IMG/M
3300027198Estuarine microbial communities from the Columbia River estuary - Ebb tide non-ETM metaG S.753 (SPAdes)EnvironmentalOpen in IMG/M
3300027228Estuarine microbial communities from the Columbia River estuary - metaG 1550A-3 (SPAdes)EnvironmentalOpen in IMG/M
3300027413Ammonia-oxidizing marine microbial communities from Monterey Bay, California, USA - CAN11_54_BLW_10 (SPAdes)EnvironmentalOpen in IMG/M
3300027677Marine microbial communities from oxygen minimum zone in mesopelagic equatorial Pacific - METZYME_3_300m (SPAdes)EnvironmentalOpen in IMG/M
3300027753Estuarine microbial communities from the Columbia River estuary - Flood tide ETM metaG S.741 (SPAdes)EnvironmentalOpen in IMG/M
3300027801Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB8_128 (SPAdes)EnvironmentalOpen in IMG/M
3300027813Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB2_152 (SPAdes)EnvironmentalOpen in IMG/M
3300027827Marine microbial communities from the Southern Atlantic Ocean, analyzing organic carbon cycling - AAIW_A/KNORR_S2/LV (SPAdes)EnvironmentalOpen in IMG/M
3300027833Marine eukaryotic phytoplankton communities from Arctic Ocean - Fram Strait ARC3M Metagenome (SPAdes)EnvironmentalOpen in IMG/M
3300028126Seawater microbial communities from Monterey Bay, California, United States - 60DEnvironmentalOpen in IMG/M
3300028129Seawater microbial communities from Monterey Bay, California, United States - 42DEnvironmentalOpen in IMG/M
3300028192Marine microbial communities from Northeast Subartic Pacific Ocean, Canada - LP_J_2011_P26_500mEnvironmentalOpen in IMG/M
3300028280Seawater microbial communities from Monterey Bay, California, United States - 58DEnvironmentalOpen in IMG/M
3300028284Marine microbial communities from Saanich Inlet, British Columbia, Canada - SI106_10EnvironmentalOpen in IMG/M
3300028287Marine microbial communities from Saanich Inlet, British Columbia, Canada - SI060_120mEnvironmentalOpen in IMG/M
3300028414Seawater microbial communities from Monterey Bay, California, United States - 33DEnvironmentalOpen in IMG/M
3300031886Ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M1 200m 3416EnvironmentalOpen in IMG/M
3300032130Ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M1 200m 34915EnvironmentalOpen in IMG/M
3300032360Ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M1 500m 34915EnvironmentalOpen in IMG/M
3300034695Seawater microbial communities from the Northeast subarctic Pacific Ocean - P26_June_2012_500mEnvironmentalOpen in IMG/M

Geographical Distribution
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Family Sequences

Note: Some of these sequences are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Protein ID Sample Taxon ID Habitat Sequence
OpTDRAFT_1008765523300000928Freshwater And MarineVSKYNIYNKHLMSYAEWVERYKGKQIDEVILEDHKVYLRQFKAWQIGNIERV*
BpDRAFT_1000515043300000930Freshwater And MarineMPKYNIYNKHLMSYAEWVERYKGKQIDEVILEDHKVYLKQFKAWQIGNIERV*
JGI26238J51125_105747423300003478MarineVSKYNIYNKHLMSYAEWVERYKGKQIDEVILEDHKVYLKQFKAWQIGNIERV*
Ga0063391_100218483300003937MarineMVMNKYNIHNKHLMSYEEWLQRYKGKQIDEVMLDDHKIYLSQFKSWQIGNIERV*
Ga0070743_1017461923300005941EstuarineMSYAEWVERYKGKQIDEVILEDHKVYLKQFKAWQIGNIERV*
Ga0066379_1016297613300005951MarinePLYTPLSYKYNIHNKHLMSYAEWVERYKGKQIDEVILEDHKVYLRQFKAWQIGNIEKV*
Ga0066373_1008938323300006011MarineMSYAEWVERYKGKQIDEVILEEHKVYLRQFKAWQIGNIERV*
Ga0098048_100219723300006752MarineMSYAEWVERYKGKQIDEVILEDHKVYLKQFKSWQIGNIERV*
Ga0098048_101456793300006752MarineMSYAEWVERYKGKQIDEVTLEDHKVYLKQFKSWQIGNIERV*
Ga0098048_118055023300006752MarineMSYAEWVERYKGKQIDEVKLAEHKVYHKQFKSWQIGNIERV*
Ga0098054_111662513300006789MarineMSYAEWVERYKGKQIDEVILEDHKVYLKQFKAWQIGNIER
Ga0098054_112754923300006789MarineMSYAEWVERYKGKQIDEVKLAEHKVYHKQFKSWQIGNIERI*
Ga0098055_105618233300006793MarineLSYKYNIHNKHLMSYAEWVERYKGKQIDEVKLAEHKVYHKQFKSWQIGNIERV*
Ga0098055_117012613300006793MarineMSYAEWVERYKGKQIDEVKLAEHKVYHKQFKSWQIGNIE
Ga0098055_127598433300006793MarineLFNKYNINNKHLMSYAEWVERYKGKQIDEVTLEDHKVYLKQFKSWQIGNIERV*
Ga0066372_1001494813300006902MarineIHNKHLMSYAEWVERYKGKQIDEVILEDHKVYLRQFKAWQIGNIERV*
Ga0066372_1028859333300006902MarineMSYAEWVERYKGKQIDEVILEDHKVYLRQFKAWQIGNIEKV*
Ga0098051_106550713300006924MarineNKHLMSYAEWVERYKGKQIDEVKLAEHKVYHKQFKSWQIGNIERV*
Ga0098050_103018343300006925MarineSYAEWVERYKGKQIDEVKLAEHKVYHKQFKSWQIGNIERV*
Ga0098050_111839623300006925MarineLFNKYNINNKHLMSYAEWVERYKGKQIDEVILEDHKVYLKQFKAWQIGNIERV*
Ga0075444_1023649423300006947MarineMRMSYAEWVERYKGKQIDDVILEDHKVYLRQFKAWQIGNIEKVF*
Ga0105019_10001151733300007513MarineMSYAEWVERYKGKQIDEVILEDHKVYLRQFKAWQIGNIERV*
Ga0105020_1007697133300007514MarineMSYAEWVERYKGKQIDEVKLAEHKVYHKQFKAWQIGNIERV*
Ga0102821_115870123300007557EstuarineMVMNKYNIHNKHLMSYEEWLQRYKGKQVDEVVLDDHKIYLSQFKSWQIGNIERV*
Ga0102822_100907713300007558EstuarineAEWVERYKGKQIDEVVLESHKVYLKQFKAWQIGNMEKI*
Ga0102908_113644713300007665EstuarineWVERYKGKQIDEVILEDHKVYLKQFKAWQIGNIERV*
Ga0102824_106599733300007681EstuarineMSYAEWVERYKGKQIDEVILEDHKIYLRQFKAWQIGNIERV*
Ga0102823_101524033300007692EstuarineMSYAEWVERYKGKHIDEVVLESHKVYLKQFKAWQIGNMEKI*
Ga0105349_1000713013300008253Methane Seep MesocosmYNIYNKHLMSYAEWVERYKGKQIDEVILEDHKVYLKQFKAWQIDNIERV*
Ga0105349_1000988243300008253Methane Seep MesocosmMSYAEWVERYKGKQIDEVILEDHKVYLRQFKAWQIGNIKRV*
Ga0102813_103791353300009003EstuarineYNKHLMSYAEWVERYKGKQIDEVILEDHKVYLKQFKAWQIGNIERV*
Ga0102830_118979113300009059EstuarineSYAEWVERYKGKQIDEVVLESHKVYLKQFKAWQIGNMEKI*
Ga0102814_1045470523300009079EstuarineVATKYNIYNKHLMPYSEWLKRYKGKLIEDVILSEHSVYLNQFKSWQIGNIERV*
Ga0102815_1077648113300009080EstuarineNLVSLCLVSKYNIYNKHLMSYAEWVERYKGKQIDEVILEDHKIYLRQFKAWQIGNIERV*
Ga0114994_1003573593300009420MarineMSYAEWVERYKGKQIDEVILEDHKVYLRQFKAWQIGNI
Ga0114994_1021203133300009420MarineHLMSYAEWVERYKGKQIDEVILEDHKVYLRQFKAWQIGNIERV*
Ga0114994_1072507213300009420MarineHLMSYAEWVERYKGKQIDEVILEDHKVYLRQFKAWQIGNIEKV*
Ga0115008_1001407553300009436MarineMSYNEWVERYKGKQIDEVILEDHKIYLRQFKSWQIGNIERV*
Ga0115008_1083920623300009436MarineMSYAEWVERYKGKQVDEVILETHKVYLKQFKAWQIGNIERV*
Ga0115102_1078562043300009606MarineMNKYNIHNKHLMSYEEWLQRYKGKQIDEVMLDDHKIYLSQFKSWQIGNIERV*
Ga0115000_1016179253300009705MarineMSYAEWVERYKGKQIDEVILEDHKVYLRQFKAWQIGNIE
Ga0187219_117440013300017751SeawaterENKHLMSYEEWLQRYKGKQIDEVMLDDHKIYLSQFKSWQIGNIERV
Ga0181394_106343933300017776SeawaterMRKYNIYNKHLMSYAEWVERYKGKQIDDVVLESHKVYLKQFKAWQIGNMEKI
Ga0211689_116160823300020358MarineNKYNANNKHLMSYEEWLIRYKGKQIDNVELQEHKVYHRQFKSWQIGNIERL
Ga0211656_1001323043300020375MarineMSYTEWVERYKGKQIDEVILEDHKVYLRQFKAWQIGNIERV
Ga0211682_1001299133300020376MarineMSYTEWVERYKGKQIDEVILEDHKVYLKQFNAWQIGNIEKV
Ga0211639_1018329213300020435MarineYNIYNKHLMSYAEWVERYKGKQIDEVILEEHKVYLRQFKAWQIGNIERL
Ga0206686_101050943300021065SeawaterMSYAEWVERYKGKQIDEVILEDHKVYLRQFKAWQIGNIERL
Ga0206684_127404823300021068SeawaterLIKKDEYNINNKMRMSYAEWVERYKGKQIDEVILEDHKVYLRQFKAWQIGNIERV
Ga0206678_1008372943300021084SeawaterMSYAEWVERYKGKQIDEVILEDHKVYLKQFKAWQIGNIERV
Ga0206679_1013692733300021089SeawaterLKIDKKDEYNINNKMRMSYAEWVERYKGKQIDEVILEDHKVYLRQFKAWQIGNIERV
Ga0206682_10000238763300021185SeawaterMVMNKYNIHNKHLMSYEEWLQRYKGKQIDEVMLDDHKIYLSQFKSWQIGNIERV
Ga0213869_10001677183300021375SeawaterMSYAEWVERYKGKQVDEVILETHKVYLKQFKAWQIGNIERV
Ga0213869_1017552313300021375SeawaterMRKYNIYNKHLMSYVEWVERYKGKQVDEVILETHKVYLKQFKAWQIGNIERV
Ga0222717_1016271333300021957Estuarine WaterMPYSEWLKRYKGKLVEEVILSEHSAYLKQFKAWQIGNMERV
Ga0222717_1035462033300021957Estuarine WaterMSYAEWVERYKGKQIDEVILEDHKIYLRQFKAWQIGNIERV
(restricted) Ga0233433_1015273113300022931SeawaterMPKYNIYNKHLMSYAEWVERYKGKQIDEVVLESHKVYLKQFKAWQIGNMEKI
(restricted) Ga0233412_1043626823300023210SeawaterVRKYNIYNKHLISYAEWVERYKGKHIDEVVLESHKVYLKQFKAWQIGNMEKI
Ga0228668_108802723300024180SeawaterMSYEEWLQRYKGKQIDEVILDDHKIYLSQFKSWQIGNIERV
Ga0228667_102838313300024226SeawaterYEEWLQRYKGKQIDEVILDDHKIYLSQFKSWQIGNIERV
Ga0228633_101071733300024228SeawaterMRKYNIYNKHLMSYAEWVERYKGKQIDEVVLESHKVYLKQFKAWQIDNMERI
Ga0233402_1002593113300024229SeawaterMVLNKYNIHNKHLMSYEEWLQRYKGKQIDEVMLDDHKTYLSQFKSWQIGNIERV
Ga0233402_100949623300024229SeawaterMRKYNIYNKHLMSYAEWVERYKGKQIDEVVLESHKVYLKQFKAWQIGNMEKI
Ga0233399_101152113300024231SeawaterMRKYNIYNKHLMSYAEWVERYKGKQIDEVVLESHKVYLKQFKAWQIGNMERI
Ga0228665_101497323300024235SeawaterMVMNKYNIHNKHLMSYEEWLQRYKGKQIDEVMLDDHKTYLSQFKSWQIGNIERV
Ga0228655_100465953300024236SeawaterMSYAEWVERYKGKQIDEVILEDHKVYLRQFKAWQIGNIERV
Ga0228655_101635943300024236SeawaterGSIIVKYNINNKHLMSYEEWLIRYKGKQIDEIELQEHKVYHRQFKSWQIGNIERL
Ga0228660_104395323300024291SeawaterVPTKYNLYNKHLMPYSEWLKRYKGKLVEEVILSEHSAYLKQFKEWQIGNMERV
Ga0228658_109007333300024297SeawaterMVMNKYNIHNKHLMSYEEWLQRYKGKQIDEVILDDHKIYLSQFKSWQIGNIERV
Ga0228657_104226913300024314SeawaterNKHLMSYEEWLQRYKGKQIDEVMLDDHKIYLSQFKSWQIGNIERV
Ga0228626_111073633300024321SeawaterYNIYNKHLMSYAEWVERYKGKQIDEVILEDHKVYLRQFKAWQIGNIERV
Ga0244777_1004399393300024343EstuarineMPKYNIYNKHLMSYAEWVERYKGKQIDEVILEDHKVYLKQFKAWQIGNIERV
Ga0244775_10031698123300024346EstuarineRKYNIYNKHLMSYAEWLELYKGKQIDEVELTEHKVHQKQFKAWQIGNMERV
Ga0244775_1082492023300024346EstuarineMVMNKYNIHNKHLMSYEEWLQRYKGKQVDEVVLDDHKIYLSQFKSWQIGNIERV
Ga0208298_102531833300025084MarineNKHLMSYAEWVERYKGKQIDEVKLAEHKVYHKQFKSWQIGNIERV
Ga0208434_100703143300025098MarineMSYAEWVERYKGKQIDEVTLEDHKVYLKQFKSWQIGNIERV
Ga0208793_1000835193300025108MarineMSYAEWVERYKGKQIDEVILEDHKVYLKQFKSWQIGNIERV
Ga0208793_1010690103300025108MarineMSYAEWVERYKGKQIDEVKLAEHKVYHKQFKSWQIGNIERI
Ga0208793_101246823300025108MarineMSYAEWVERYKGKQIDEVKLAEHKVYHKQFKSWQIGNIERV
Ga0209494_100309143300025673Methane Seep MesocosmMSYAEWVERYKGKQIDEVILEDHKVYLKQFKAWQIDNIERV
Ga0209494_101234213300025673Methane Seep MesocosmLMSYAEWVERYKGKQIDEVILEDHKVYLRQFKAWQIGNIKRV
Ga0209657_110472223300025676MarineVATKYNIYNKHLMPYSEWLKRYKGKLIEDVILSEHSVYLNQFKSWQIGNIERV
Ga0209140_122127813300025688MarineNLVSLCLVSKYNIYNKHLMSYAEWVERYKGKQIDEVILEDHKVYLKQFKAWQIGNIERV
Ga0209252_110758243300025719MarineISYAEWVERYKGKQIDEVVLESHKVYLKQFKAWQIGNMEKI
Ga0209362_103524213300025770MarineLCLVSKYNIYNKHLMSYAEWVERYKGKQIDEVILEDHKVYLKQFKAWQIGNIERV
Ga0228620_100253413300026483SeawaterLQRYKGKQIDEVILDDHKIYLSQFKSWQIGNIERV
Ga0208962_100831653300027048MarineNKYNIYNKHLMSYAEWVERYKGKQIDEVILEDHKVYLRQFKAWQIGNIERV
Ga0208921_104900813300027188EstuarineSKYNIYNKHLMSYAEWVERYKGKQIDEVVLESHKVYLKQFKAWQIGNMEKI
Ga0208922_101121023300027197EstuarineMSYAEWVERYKGKHIDEVVLESHKVYLKQFKAWQIGNMEKI
Ga0208163_106978813300027198EstuarineIYNKHLMSYAEWVERYKGKQIDEVILEDHKIYLRQFKAWQIGNIERV
Ga0208308_105018913300027228EstuarineNKHLMSYAEWVERYKGKQIDEVILEDHKVYLKQFKAWQIGNIERV
Ga0208950_109929923300027413MarineMVMNKYNIHNKHLMSYEEWLQRYKGKQIDEVILEDHKIYLRQFKAWQIGNIERV
Ga0209019_105469423300027677MarineMSYAEWVERYKGKQIDEVILEEHKVYLRQFKAWQIGNIERV
Ga0208305_1002931453300027753EstuarineMSYAEWVERYKGKQIDEVILEDHKVYLKQFKAWQIGN
Ga0209091_10014944123300027801MarineMSYAEWVERYKGKQIDEVILEDHKVYLRQFKAWQIGNIEGALV
Ga0209091_1040971723300027801MarineKHLMSYAEWVERYKGKQIDEVILEDHKVYLRQFKAWQIGNIEKV
Ga0209090_10011005113300027813MarineLPNKYNVHNKHLMSYAEWVERYKGKQIDEVILEDHKVYLRQFKAWQIGNIERV
Ga0209035_1001731793300027827MarineMSYTEWVERYKGKQIDEVILEDHKVYLKQFKAWQIGNIERV
Ga0209092_10000896273300027833MarineMPYSEWLKIYKGKLIEEVILSEHNVYLKQFKSWQIGNIERV
Ga0228648_106872833300028126SeawaterHNKHLMSYEEWLQRYKGKQIDEVMLDDHKIYLSQFKSWQIGNIERV
Ga0228634_112717813300028129SeawaterMRKYNIYNKHLMSYAEWVERYKGKQIDEVVLESHKVYLKQFKAWQIGNMER
Ga0257107_105892643300028192MarineMSYTEWVERYKGKQIDKVILEDHKVYLRQFKAWQIGNIERV
Ga0228646_105041823300028280SeawaterMSYEEWLQRYKGKQIDEVMLDDHKIYLSQFKSWQIGNIERV
Ga0257120_105021813300028284MarineVRKYNIYNKHLISYAEWVERYKGKQIDEVVLESHKVYLKQFKAWQIGNMEKI
Ga0257126_120664923300028287MarineYAEWVERYKGKQIDEVVLESHKVYLKQFKAWQIGNMEKI
Ga0228627_105049443300028414SeawaterDCSAWPLIILLPNKYNIYNKHLMSYAEWVERYKGKQIDEVILEDHKVYLRQFKAWQIGNIERV
Ga0315318_1007822443300031886SeawaterMSYAEWVERYKGKQIDEVILEEHKVYLRQFKAWQIGNIERL
Ga0315333_1019862823300032130SeawaterKHLMSYAEWVERYKGKQIDEVILEDHKVYLKQFKAWQIGNIERV
Ga0315334_1057376513300032360SeawaterDYWLERYKGKLIDDVTLMEHKLYHKQFKAWQIGNIEKVF
Ga0372840_009919_1000_11253300034695SeawaterMSYAEWVERYKGKQIDEVILEDHKVYLKQFKAWQIGNIERI


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