Scaffold Ga0209494

Basic Information
Taxon OID	3300025673 Open in IMG/M
Scaffold ID	Ga0209494_1003091 Open in IMG/M
Source Dataset Name	Methane-oxidizing microbial communities from mesocosms in the Hudson Canyon - EN1B Hudson Canyon (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300025673 Open in IMG/M

Scaffold ID

Ga0209494_1003091 Open in IMG/M

Source Dataset Name

Methane-oxidizing microbial communities from mesocosms in the Hudson Canyon - EN1B Hudson Canyon (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	7075
Total Scaffold Genes	18 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	13 (72.22%)
Novel Protein Genes	5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	3 (60.00%)
Associated Families	5

Scaffold Components

Scaffold Length (bps)

7075

Total Scaffold Genes

18 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

13 (72.22%)

Novel Protein Genes

5 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

3 (60.00%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Methane Seep Mesocosm → Methane-Oxidizing Microbial Communities From Mesocosms In The Gulf Of Mexico And Hudson Canyon, Usa

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Unclassified → Unclassified → Methane Seep Mesocosm → Methane-Oxidizing Microbial Communities From Mesocosms In The Gulf Of Mexico And Hudson Canyon, Usa

Source Dataset Sampling Location
Location Name	Hudson Canyon
Coordinates	Lat. (^o)	39.55	Long. (^o)	-72.4	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Hudson Canyon

Coordinates

Lat. (^o)

39.55

Long. (^o)

-72.4

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F049233	Metagenome / Metatranscriptome	147	N
F059362	Metagenome / Metatranscriptome	134	Y
F087020	Metagenome / Metatranscriptome	110	N
F090619	Metagenome / Metatranscriptome	108	Y
F090865	Metagenome	108	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209494_100309111	F059362	AGGAG	MTKDWYLSGVIKTGEPFLVEDNVKLRKTATIEGNIGKIIRVGTMNDVEFDYDIGSLISIDDTSLVIRSLQSGDLKAYDLNCTNSGLYKGTIEV
Ga0209494_100309114	F090619	N/A	VPHKEDNMTKEQYIQIRTKVPIDSDGTVFKEFNANEKFRRQDISIMLKLLPLIEEYKLDFLPKIVEYNDKGYRYEFVEGKTIKEQVDGGMKVSQKMLLEMKIAMDDIWEKFYEISIENRYNPLFRGNGFLYHGDPWLGNAIWNDDTRELKFIDLDSLSIAEFVPVTQLNNMFFQHLETLLMTQDNNKSTLGTWI
Ga0209494_10030913	F090865	GGAG	MNKIHIFSTARSGTHYLESLISGMRGIPIVPSPFEERDDENSPGSQELINNINEFSAIDSMVFKTHPNWLYPIDTSVEQFKYCNVPNDDMLPLVQQFTQVADYTLGLIRLNIVEVALSFALAFHNWRLDPSEIGSFRPPYKNTTVTIPIDDFVEYCYKVLAIYEVMFAQKDIQCDKIIYYEDLAFDSTDARLTGLAPIHDIKSSVKQAKSKKITIANYDELYEYAIKFYSMHQWSMKITDGVITDINNFTNLIKKR
Ga0209494_10030914	F087020	N/A	MSYAEWVERYKGKQIDEVILEDHKVYLKQFKAWQIDNIERV
Ga0209494_10030917	F049233	GGTGG	VIKITEQKVLGDIGEKIVSNYMSKIGRTVEMSTDPFDSEKDMIVNGKNLEVKTQVPYCLDKSFTIRRNQLNKCLNADYFVIVQAPCEYLNEAAIWKVKKGFTYNTVKLKGGGERLAIPMNQPNVIKKMDIVGEDKALLRKYSTDFGG

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0209494_1003091

Overview

Ecosystem & Geography

Associated Families

Sequences