NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209601_1142469

Scaffold Ga0209601_1142469


Overview

Basic Information
Taxon OID3300025666 Open in IMG/M
Scaffold IDGa0209601_1142469 Open in IMG/M
Source Dataset NamePelagic marine microbial communities from North Sea - COGITO_mtgs_110426 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)675
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Pelagic → Unclassified → Pelagic Marine → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location
Location NameGermany:Helgoland, sampling site Kabeltonne, North Sea
CoordinatesLat. (o)54.1883Long. (o)7.9Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F044514Metagenome / Metatranscriptome154N
F092096Metagenome / Metatranscriptome107N
F105168Metagenome / Metatranscriptome100N

Sequences

Protein IDFamilyRBSSequence
Ga0209601_11424691F105168GGAGMEVIKQIFGDKMSDYKIVDIILKIWIAGLLSMVVLGLIGVISHIIMNPSSIDNATFGVFDTLGS
Ga0209601_11424692F044514N/AMSSFKKWWKENGQGIGFISGIVFLNAYFLMLGDLMNEHEWLAGVWLLCFFGFAGWYSWQMKIHGWRLPKNIKDTH
Ga0209601_11424693F092096N/AENNQSVNVEGPNIVINIPEQKTETKTIIKEVKVPVEKKKEKEQEIDW

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