Scaffold Ga0209601_1142469

Overview

Basic Information

• Taxon OID: 3300025666
• Scaffold ID: Ga0209601_1142469
• Source Dataset Name: Pelagic marine microbial communities from North Sea - COGITO_mtgs_110426 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 675
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Pelagic → Unclassified → Pelagic Marine → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location

• Location Name: Germany:Helgoland, sampling site Kabeltonne, North Sea
• Coordinates
  • Lat. (^o): 54.1883
  • Long. (^o): 7.9
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F044514	Metagenome / Metatranscriptome	154	N
F092096	Metagenome / Metatranscriptome	107	N
F105168	Metagenome / Metatranscriptome	100	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209601_11424691	F105168	GGAG	MEVIKQIFGDKMSDYKIVDIILKIWIAGLLSMVVLGLIGVISHIIMNPSSIDNATFGVFDTLGS
Ga0209601_11424692	F044514	N/A	MSSFKKWWKENGQGIGFISGIVFLNAYFLMLGDLMNEHEWLAGVWLLCFFGFAGWYSWQMKIHGWRLPKNIKDTH
Ga0209601_11424693	F092096	N/A	ENNQSVNVEGPNIVINIPEQKTETKTIIKEVKVPVEKKKEKEQEIDW