NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208849_1000332

Scaffold Ga0208849_1000332


Overview

Basic Information
Taxon OID3300025664 Open in IMG/M
Scaffold IDGa0208849_1000332 Open in IMG/M
Source Dataset NameArctic peat soil from Barrow, Alaska - NGEE Surface sample 53-3 deep-072012 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)45941
Total Scaffold Genes42 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)34 (80.95%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Permafrost → Arctic Peat Soil → Arctic Peat Soil Microbial Communities From The Barrow Environmental Observatory Site, Barrow, Alaska, Usa

Source Dataset Sampling Location
Location NameBarrow Environmental Observatory site, Barrow, Alaska
CoordinatesLat. (o)71.2999Long. (o)-156.61Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F050027Metagenome146Y
F067240Metagenome126Y

Sequences

Protein IDFamilyRBSSequence
Ga0208849_100033241F067240AGGAGMSTVYTLSALLHLSDLQLRGLLNRARYDLDCSTRGSIERRDALLNLEIIHRVLAQRRAQPRPPGC
Ga0208849_10003326F050027GGAMQSAEDRNILRMGPPDHPGGTEITPAMVESVCQRINDAGGVLTVWAVLHEDVYESRYGDGLYLHVHGLALNSADAHRLAALGGGDSELGKWHVRSYRLGLKDNAPVFTALWRPEEEFRVGDFVAILYEIPPGGTASKLLTGTGLRKDGPLLSLP

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