Scaffold Ga0208134_1100309

Overview

Basic Information

• Taxon OID: 3300025652
• Scaffold ID: Ga0208134_1100309
• Source Dataset Name: Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Mar_31 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 802
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Archaea → Euryarchaeota (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location

• Location Name: USA: Delaware Bay
• Coordinates
  • Lat. (^o): 39.124826
  • Long. (^o): -75.260873

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002430	Metagenome / Metatranscriptome	560	Y
F011124	Metagenome / Metatranscriptome	295	Y
F061818	Metagenome / Metatranscriptome	131	N
F074150	Metagenome / Metatranscriptome	120	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0208134_11003091	F002430	AGGAG	MITLNLPPKQVNAMLVAMDAEIEMQLGGRPVDWESFPEIAAMLMAYYTTRCKFEEIYDDS
Ga0208134_11003092	F011124	AGGAG	MFNPDKSYSVLVWDMPVSVWDDDADDYIRNEDGSIKLFSLPNYDYSYICEGVDVDDLHERDEGDDYNDNT
Ga0208134_11003093	F074150	GGAG	MPKYEVTRSYTVACVATVEAESVDQAKRMAFESDLYWKEYDGDYHTEVDVEEIDNV
Ga0208134_11003095	F061818	N/A	FWAWVDQCPDGVYVNHDFTDDEDDQKIHVFGFAVPKEIDDD