Scaffold Ga0208161_1008970

Overview

Basic Information

• Taxon OID: 3300025646
• Scaffold ID: Ga0208161_1008970
• Source Dataset Name: Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1508_1S Viral MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4278
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (55.56%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location

• Location Name: USA: Chesapeake Bay
• Coordinates
  • Lat. (^o): 38.9819
  • Long. (^o): -76.3716

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000888	Metagenome / Metatranscriptome	847	Y
F002644	Metagenome / Metatranscriptome	540	Y
F016270	Metagenome / Metatranscriptome	248	N
F029717	Metagenome	187	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208161_10089701	F029717	N/A	MSFAMDNYVDVATRLQMAFKRWPELRIQETAREVI
Ga0208161_10089703	F002644	AGG	MTDNLYQDPQFKALMQVMNDITQNKVPIYNPWELAARSTLRKIQHEIDDRNALDDGELIDVLNQTRIEIKYLLSIINDLHERVKERDIEIGIKQLRLNENEAEIQRLENMVHRAN
Ga0208161_10089706	F016270	N/A	MRTRPGIVSNHARGLAMDLSYRWLNQKKLGMREGRKTSLAFIIKCLQNADHLGIQLVIDYQLQRSWRCDRGTWKPLPSVEQGDWYHIEIEPLLAHNPDIVKARFDAVFGAFPTSPPKPV
Ga0208161_10089707	F000888	AGG	MDRQFFAQLDQNNVVIDVHCVTQEFIEANPDRYPGVWVETFFDTDGKTYAGINFIYDFDTQDFTPPPPIELDDDGQ