Basic Information | |
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Taxon OID | 3300025641 Open in IMG/M |
Scaffold ID | Ga0209833_1001452 Open in IMG/M |
Source Dataset Name | Pelagic marine microbial communities from North Sea - COGITO_mtgs_110506 (SPAdes) |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 15739 |
Total Scaffold Genes | 35 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 6 (17.14%) |
Novel Protein Genes | 5 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 0 (0.00%) |
Associated Families | 5 |
Taxonomy | |
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Not Available | (Source: ) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Marine → Pelagic → Unclassified → Pelagic Marine → Pelagic Marine Microbial Communities From North Sea |
Source Dataset Sampling Location | ||||||||
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Location Name | Germany:Helgoland, sampling site Kabeltonne, North Sea | |||||||
Coordinates | Lat. (o) | 54.1883 | Long. (o) | 7.9 | Alt. (m) | Depth (m) | 1 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F035835 | Metagenome / Metatranscriptome | 171 | Y |
F042800 | Metagenome | 157 | Y |
F073265 | Metagenome | 120 | Y |
F076110 | Metagenome / Metatranscriptome | 118 | Y |
F085723 | Metagenome | 111 | N |
Protein ID | Family | RBS | Sequence |
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Ga0209833_100145219 | F035835 | N/A | MTSRQIDPITGITEGAMRTLLKSVLRPCWRRTSRKTFIASVRYHSENPKTGRNWFVVDCADCKRVMGCSEKERRPLKSGGLSKKPRSVYEIDHVDGITPLTDIRKTLGEHFYSMIYGKQEVVCYSCHQARSAIQTKERNNKKKRLTTSQQSNK |
Ga0209833_100145222 | F085723 | N/A | MITKIKFNLLHPTLNAMQQQAAYQLSEIEGWDVEGKKAFKDGLTIHLHENGNALCKPSRRLHGFN |
Ga0209833_100145223 | F073265 | N/A | MTKTQAYIRASKFYLSEELPPDFDELDEQDVTNFIQDNAWQPFEQWEPHGIWELIEDLANEFIELSNLNH |
Ga0209833_100145224 | F042800 | N/A | MNKVTLHAYKSTPFGLERVNDHPLTIAEAKAMLRANPSLTVRDAQSASYEVLHDWQDEEPTEQELAVARNFSAGIIIAVAASIALFIAEILTR |
Ga0209833_10014525 | F076110 | N/A | MKYPNGTKLTGLGLNLILEDTELLTEDGSYGEDTWLYHWTTPEGRSFLTTDIELAGYLADGATLV |
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