Scaffold Ga0209833_1001452

Overview

Basic Information

• Taxon OID: 3300025641
• Scaffold ID: Ga0209833_1001452
• Source Dataset Name: Pelagic marine microbial communities from North Sea - COGITO_mtgs_110506 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 15739
• Total Scaffold Genes: 35
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (17.14%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Pelagic → Unclassified → Pelagic Marine → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location

• Location Name: Germany:Helgoland, sampling site Kabeltonne, North Sea
• Coordinates
  • Lat. (^o): 54.1883
  • Long. (^o): 7.9
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F035835	Metagenome / Metatranscriptome	171	Y
F042800	Metagenome	157	Y
F073265	Metagenome	120	Y
F076110	Metagenome / Metatranscriptome	118	Y
F085723	Metagenome	111	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209833_100145219	F035835	N/A	MTSRQIDPITGITEGAMRTLLKSVLRPCWRRTSRKTFIASVRYHSENPKTGRNWFVVDCADCKRVMGCSEKERRPLKSGGLSKKPRSVYEIDHVDGITPLTDIRKTLGEHFYSMIYGKQEVVCYSCHQARSAIQTKERNNKKKRLTTSQQSNK
Ga0209833_100145222	F085723	N/A	MITKIKFNLLHPTLNAMQQQAAYQLSEIEGWDVEGKKAFKDGLTIHLHENGNALCKPSRRLHGFN
Ga0209833_100145223	F073265	N/A	MTKTQAYIRASKFYLSEELPPDFDELDEQDVTNFIQDNAWQPFEQWEPHGIWELIEDLANEFIELSNLNH
Ga0209833_100145224	F042800	N/A	MNKVTLHAYKSTPFGLERVNDHPLTIAEAKAMLRANPSLTVRDAQSASYEVLHDWQDEEPTEQELAVARNFSAGIIIAVAASIALFIAEILTR
Ga0209833_10014525	F076110	N/A	MKYPNGTKLTGLGLNLILEDTELLTEDGSYGEDTWLYHWTTPEGRSFLTTDIELAGYLADGATLV