Scaffold Ga0209716_1020119

Overview

Basic Information

• Taxon OID: 3300025626
• Scaffold ID: Ga0209716_1020119
• Source Dataset Name: Pelagic marine microbial communities from North Sea - COGITO_mtgs_120531 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2706
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (72.73%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → unclassified viruses → unclassified DNA viruses → unclassified dsDNA viruses → Prokaryotic dsDNA virus sp. (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Pelagic → Unclassified → Pelagic Marine → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location

• Location Name: Germany:Helgoland, sampling site Kabeltonne, North Sea
• Coordinates
  • Lat. (^o): 54.1883
  • Long. (^o): 7.9
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F020603	Metagenome	223	Y
F028622	Metagenome	191	Y
F092711	Metagenome	107	N
F098057	Metagenome	104	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209716_102011910	F098057	AGGAG	MTLDQILKLQSIVDKRAIRSDTLEFLNQTRYSDSKKANIRFGDMHIDHFLTVVSNDFININNNEEKEKSFHEMLEKVKKKIIKEFSHGNH
Ga0209716_10201194	F092711	GGAG	MVQLEITLTGRSKSFTGDTLQDCAKQFFDEYGEASKEVVKCHTFETNDPTQFMSIGGNESCVAWLKQMQQGAIDDK
Ga0209716_10201195	F020603	AGGAG	MINKLLIIIFCLFLTNCSTYKPLINPETSKDKHNGDVIAGNYWKDLQACRYIHSQNTGIIIKTLGISDQTVFVKKCMEDYGYSILR
Ga0209716_10201196	F028622	N/A	MLDEDKTYENEVVPISDDRGSLDLTRQIDELNKKVKNLDGLEKIHRQTNGDLRIHILKLDKKIYELKKNMAIEKENHQIEIMEKDNEIGRLIKKITEK