NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209716_1001803

Scaffold Ga0209716_1001803


Overview

Basic Information
Taxon OID3300025626 Open in IMG/M
Scaffold IDGa0209716_1001803 Open in IMG/M
Source Dataset NamePelagic marine microbial communities from North Sea - COGITO_mtgs_120531 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)15182
Total Scaffold Genes39 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (12.82%)
Novel Protein Genes7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families7

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Pelagic → Unclassified → Pelagic Marine → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location
Location NameGermany:Helgoland, sampling site Kabeltonne, North Sea
CoordinatesLat. (o)54.1883Long. (o)7.9Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000352Metagenome / Metatranscriptome1247Y
F001217Metagenome / Metatranscriptome745Y
F012788Metagenome / Metatranscriptome277Y
F017299Metagenome / Metatranscriptome241Y
F029758Metagenome / Metatranscriptome187Y
F058909Metagenome / Metatranscriptome134Y
F067108Metagenome / Metatranscriptome126Y

Sequences

Protein IDFamilyRBSSequence
Ga0209716_100180317F017299N/AMHEQPLKITLEFYNKKISTEVDHSDLKLDELHDLWVGILKGMGYHSDTIEEFYE
Ga0209716_100180325F001217N/AMSKTKFNGFEKYFIQTALRHAIEEAEKDVLAAKADGKRSIYAPGYFTMVGNEIIDKVNSMTLKKYQD
Ga0209716_100180326F067108N/AMSKKIIKVCENVDFSMYTKFTKDLGLFQVDASIWSMVSQDCRQSHDIQDIELEFSMNNKTCKYLGFKELYEKLYGINTFNKFRDDLTEEFEVAYFEHTPYKTK
Ga0209716_100180329F029758N/AMKTNDKLNAVEHIWYAESDRWIYIERYASGYLGLNFMQGDEYEHFKIKWCEMNRAISEFYDTMKNDLLKLRVDMSEIEFIDKVMWIYFEAATKYDEYN
Ga0209716_100180332F058909N/AMKLSNIETNVLLVALDHMEEEIQDLMQERELRGDMWQERLNACESIRTKIKQL
Ga0209716_100180333F000352N/AMRTIKLTDGDCTFVHYVLRMYANQTENLDQDDKQEIYEVANKFK
Ga0209716_100180337F012788N/AMNNEIRTEILATIDDLNQYLNGNVTKTGLQITLSELINKL
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