Scaffold Ga0209504_1005402

Overview

Basic Information

• Taxon OID: 3300025621
• Scaffold ID: Ga0209504_1005402
• Source Dataset Name: Pelagic marine microbial communities from North Sea - COGITO_mtgs_100511 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 7060
• Total Scaffold Genes: 14
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (28.57%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Pelagic → Unclassified → Pelagic Marine → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location

• Location Name: Germany:Helgoland, sampling site Kabeltonne, North Sea
• Coordinates
  • Lat. (^o): 54.1883
  • Long. (^o): 7.9
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F012575	Metagenome	279	Y
F055560	Metagenome / Metatranscriptome	138	Y
F066795	Metagenome	126	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209504_10054024	F012575	AGG	MSVTEYIDETAFVYRVVSDYKEVYIQWHMKDLPHLFTGRASSHEEKIEQYKSVLKELKKLKKLKK
Ga0209504_10054026	F066795	N/A	MNLTKTFPKMSSNDWRKLQLSTDAKNQRDWASRRLHDMENDPDNFTLRDYLKVRAGYITAVETLKELQ
Ga0209504_10054027	F055560	N/A	MKKPISNQSDIQDMFDSLKPTKKEQAIVWLVSPLIVLTSWAVLIWLCSQ