Scaffold Ga0209405_1003663

Overview

Basic Information

• Taxon OID: 3300025620
• Scaffold ID: Ga0209405_1003663
• Source Dataset Name: Pelagic marine microbial communities from North Sea - COGITO_mtgs_110516 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 9244
• Total Scaffold Genes: 24
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (8.33%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Pelagic → Unclassified → Pelagic Marine → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location

• Location Name: Germany:Helgoland, sampling site Kabeltonne, North Sea
• Coordinates
  • Lat. (^o): 54.1883
  • Long. (^o): 7.9
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F028771	Metagenome / Metatranscriptome	190	N
F062669	Metagenome / Metatranscriptome	130	N
F073566	Metagenome / Metatranscriptome	120	N
F090234	Metagenome / Metatranscriptome	108	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209405_100366312	F090234	N/A	MEVFDEELNKHYRSLDESSECMECGIEVQLGKRYCCFSCLDASNR
Ga0209405_100366319	F073566	N/A	MNYSKSINTLRDRTVDLLLEFTDNKSVSNYLRDIDRELERLDSAIGREPKVGWVSIDDMMWDMAKEDGSLTRVSVEFKIRQEKDYLHMNRRSIKINLVD
Ga0209405_10036634	F062669	N/A	MARKKLIKYYDTDNEAQSYSFKEGYVIYPEPMNVDSFKGEWRVSIELGHRKHTYPEILSLTEAYSKIWNEYKKIQNRDKNDKN
Ga0209405_10036637	F028771	N/A	MSFLKGNIGESLWLSEISKTHTDIEKAPNKKFYDWDVKAKYNGREVTYEVKYDAKGYYYADRYNRPVNIYIEFLNTKKGESSGILASKATYYVYILKSLDDVETAYVFDRLELLEYLRNADIKVKGNSFGGDNNAKGWIPPLNSLKHLILKKVLFI