NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209405_1003663

Scaffold Ga0209405_1003663


Overview

Basic Information
Taxon OID3300025620 Open in IMG/M
Scaffold IDGa0209405_1003663 Open in IMG/M
Source Dataset NamePelagic marine microbial communities from North Sea - COGITO_mtgs_110516 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)9244
Total Scaffold Genes24 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (8.33%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Pelagic → Unclassified → Pelagic Marine → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location
Location NameGermany:Helgoland, sampling site Kabeltonne, North Sea
CoordinatesLat. (o)54.1883Long. (o)7.9Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F028771Metagenome / Metatranscriptome190N
F062669Metagenome / Metatranscriptome130N
F073566Metagenome / Metatranscriptome120N
F090234Metagenome / Metatranscriptome108N

Sequences

Protein IDFamilyRBSSequence
Ga0209405_100366312F090234N/AMEVFDEELNKHYRSLDESSECMECGIEVQLGKRYCCFSCLDASNR
Ga0209405_100366319F073566N/AMNYSKSINTLRDRTVDLLLEFTDNKSVSNYLRDIDRELERLDSAIGREPKVGWVSIDDMMWDMAKEDGSLTRVSVEFKIRQEKDYLHMNRRSIKINLVD
Ga0209405_10036634F062669N/AMARKKLIKYYDTDNEAQSYSFKEGYVIYPEPMNVDSFKGEWRVSIELGHRKHTYPEILSLTEAYSKIWNEYKKIQNRDKNDKN
Ga0209405_10036637F028771N/AMSFLKGNIGESLWLSEISKTHTDIEKAPNKKFYDWDVKAKYNGREVTYEVKYDAKGYYYADRYNRPVNIYIEFLNTKKGESSGILASKATYYVYILKSLDDVETAYVFDRLELLEYLRNADIKVKGNSFGGDNNAKGWIPPLNSLKHLILKKVLFI

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