Scaffold Ga0209405_1000385

Overview

Basic Information

• Taxon OID: 3300025620
• Scaffold ID: Ga0209405_1000385
• Source Dataset Name: Pelagic marine microbial communities from North Sea - COGITO_mtgs_110516 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 37282
• Total Scaffold Genes: 65
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 55 (84.62%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Pelagic → Unclassified → Pelagic Marine → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location

• Location Name: Germany:Helgoland, sampling site Kabeltonne, North Sea
• Coordinates
  • Lat. (^o): 54.1883
  • Long. (^o): 7.9
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F090867	Metagenome	108	N
F095487	Metagenome	105	N
F097664	Metagenome	104	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209405_100038511	F090867	AGGAGG	MNFNDGMTRKMIKLLDHTELTNTEIAEAVGVHRQDVERFKRRRNEPISLSDEELACTQPTDGFMLYLGGGRID
Ga0209405_100038535	F095487	AGGA	MNLDTKFTPANVITIFLTIAFALMAWQDVKGQVEVNSLSIDKGQIVAEEMRDNVHTLKVDVALLKQDSINAAASREEIKANQAEILKLLRNK
Ga0209405_100038557	F097664	GAGG	MGKGSKPRPIDIGREEFSKKFDGIDWSNTKEGSLEKKKASKKNENKILPRGRKTKE