Scaffold Ga0209654_1011320

Overview

Basic Information

• Taxon OID: 3300025608
• Scaffold ID: Ga0209654_1011320
• Source Dataset Name: Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - ESP_161SG_22_DNA (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3819
• Total Scaffold Genes: 13
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 11 (84.62%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Marine → Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean

Source Dataset Sampling Location

• Location Name: Saanich Inlet, British Columbia, Canada
• Coordinates
  • Lat. (^o): 48.6
  • Long. (^o): -123.5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F021020	Metagenome / Metatranscriptome	221	Y
F034945	Metagenome / Metatranscriptome	173	Y
F042350	Metagenome / Metatranscriptome	158	Y
F090460	Metagenome / Metatranscriptome	108	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209654_101132012	F042350	AGGA	MPGRESELLRGYIQGVAAMMNLISSDEVKRLDKTNVLRYARELVETKREEETNAPR
Ga0209654_10113204	F021020	AGGAG	MSDVINLRNTVMANNYDLNIWDKIGYETEYEEEGWAIECYTFPFAGAIYGSGEYHSTIILTPTESKRLTLGWGIDLGGDYTPDADFWLDKDTFFETYTDIPERVANLLWALPDYEQSLDPDPKLAVQWW
Ga0209654_10113205	F034945	GGAGG	MGDRANVGIRGTDGNIIFLYLHWGGEDRHGIVANAIAHAMAREGEDEAYFTRIFVSRVIDRNWDKETGVGLSVNKLGAMGDGYDVPIYNYTTKKIELHEEKWDKAGGFVKYTDIEYPRDMYLSEFGIRGVNSYV
Ga0209654_10113207	F090460	GGAG	MINDKFSDKEYWEGVQYACEYFRDELGFEDATYTSLYEQATEELSVVGGSV