Scaffold Ga0209654

Basic Information
Taxon OID	3300025608 Open in IMG/M
Scaffold ID	Ga0209654_1001046 Open in IMG/M
Source Dataset Name	Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - ESP_161SG_22_DNA (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300025608 Open in IMG/M

Scaffold ID

Ga0209654_1001046 Open in IMG/M

Source Dataset Name

Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - ESP_161SG_22_DNA (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	23387
Total Scaffold Genes	34 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	22 (64.71%)
Novel Protein Genes	4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	3 (75.00%)
Associated Families	4

Scaffold Components

Scaffold Length (bps)

23387

Total Scaffold Genes

34 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

22 (64.71%)

Novel Protein Genes

4 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

3 (75.00%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Marine → Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Marine → Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean

Source Dataset Sampling Location
Location Name	Saanich Inlet, British Columbia, Canada
Coordinates	Lat. (^o)	48.6	Long. (^o)	-123.5	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Saanich Inlet, British Columbia, Canada

Coordinates

Lat. (^o)

48.6

Long. (^o)

-123.5

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F012459	Metagenome / Metatranscriptome	280	Y
F066687	Metagenome / Metatranscriptome	126	N
F072353	Metagenome	121	N
F097478	Metagenome / Metatranscriptome	104	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209654_100104612	F072353	GAG	MFSIWKKPTTVTLDCFTDQRVIHDAYEPTLAKDTMPDWWKKMAATRKFDSHSYRGLDNATLKRCPHVNELLTTGVLFPAWMQLKIKTFDRPDFAEIQTYPEGSPVIPHDPQDYAHHKPNMFHGKVMSPWQIRDTSGTKWMWTSPQWHMNNPIEYWTVPAISEFKYQHATIVNLMVPFNSQLNIEPGDPWLHLVPLTDKRIKIKTHLVTTAELAKMNSLMMGVGSYAKFMTRMKRKGR
Ga0209654_100104622	F097478	AGGAG	MNHKISDLCKKVNVMYEMSCNLRRLKYDIPKQSRTREETAQIDWLITDIQSLARDIANDTQPYNKVKTDNA
Ga0209654_100104630	F066687	AGGA	VNDIRVVDNVFPDWLLTTIQNGISNLKQWEYGNVQSAYENKVENYFNCVLWHKNYPDADDPLKGLSNVIASCFALKLLDQRPKSLQVLRLNGTTPASVQYPHRDCNMQVDDVNNTYSVVWYPFESTGGLRFWESDIDINNPSQTIDYKCNRAVLFPSAIPHAGVNPTEWPMRVSVNSVWHIPQ
Ga0209654_100104634	F012459	N/A	VLLADEDPTVGVLTTGDYDIVLERDTSITDGNNGSDTLLAAGIVDGDHIICIDEPGGTKEVRQERKGRIASVKRHRDGKTAYTWNKDRLPNPYEGNAVNADDDENTGALVAQRPWS

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0209654_1001046

Overview

Ecosystem & Geography

Associated Families

Sequences