Scaffold Ga0209654_1000113

Overview

Basic Information

• Taxon OID: 3300025608
• Scaffold ID: Ga0209654_1000113
• Source Dataset Name: Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - ESP_161SG_22_DNA (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 84153
• Total Scaffold Genes: 129
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 99 (76.74%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Marine → Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean

Source Dataset Sampling Location

• Location Name: Saanich Inlet, British Columbia, Canada
• Coordinates
  • Lat. (^o): 48.6
  • Long. (^o): -123.5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008389	Metagenome / Metatranscriptome	334	Y
F030893	Metagenome / Metatranscriptome	184	Y
F043624	Metagenome / Metatranscriptome	156	Y
F082526	Metagenome	113	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209654_1000113128	F043624	AGGA	MTKIITYKVEDIFEDIEGDDKNVLMNIPPEVSERMGWEPGDVLKITVEDGVISIEKKEDDEQK
Ga0209654_100011316	F008389	N/A	LTLESDMKIKLEIEIDTESEQDLNTIEELIEKLKELAEDMQ
Ga0209654_100011327	F082526	AGGA	MKINEITEEVIPVNNTEHAVERLKVAAELCSKMGNQPILYRAMHGGEYHGGAKNNLIQKITNPARKGVMGNFNPIQTAVLKGLNIASPAQTTTVAPASNSNYFGTNHIIIPGSDFTAYWNPDIDDLGGFKGYDPQYAQGAGPRGSTISRRDEPEGEELQKILSGYQKGIPSYSQHKGEVILDTEFYYMLNLESFLSKFGGKKVKELITIDNRKSFAAIKQDLLVDKFKTYRDVGWYLANPATNMMKWIASKEKERQ
Ga0209654_100011347	F030893	N/A	MMGHGYYGSKLNDQERHEEKFAWLPVYSSFSKKRIWLTKYHIVHILYDQNGRPPIKGWSWPLIYTKHEYLLMLLK