Scaffold Ga0208546_1001390

Overview

Basic Information

• Taxon OID: 3300025585
• Scaffold ID: Ga0208546_1001390
• Source Dataset Name: Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_0.19_D_<0.8_DNA (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 7572
• Total Scaffold Genes: 18
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (27.78%)
• Novel Protein Genes: 9
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 9

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location

• Location Name: USA: Delaware Bay
• Coordinates
  • Lat. (^o): 39.283
  • Long. (^o): -75.3633

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001018	Metagenome / Metatranscriptome	804	Y
F002333	Metagenome	569	Y
F002738	Metagenome / Metatranscriptome	533	Y
F008128	Metagenome / Metatranscriptome	338	Y
F013517	Metagenome / Metatranscriptome	270	Y
F022401	Metagenome	214	Y
F025982	Metagenome / Metatranscriptome	199	Y
F043890	Metagenome / Metatranscriptome	155	Y
F097198	Metagenome / Metatranscriptome	104	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0208546_100139010	F001018	N/A	MTQITQAKLEQLSVLKLYEHYGALERSLPLLTSESQELAKAELEACAHLRSEKVDRIYYAMAAHEDALERVKKEGDLLAQAKRHHESQLRSLKNLLNYLRRVLPLDSNKITGRNYQFTLVRKKELTVEVTSDPEFWHTAERELYCIEETVTTTKQVVVRSMSGEVLSSRTEPKTVTKILPNLDAIRSAYQEGRQLPTGVKVVQEYAVRSKRIFTEPRVDLVSSEYPDELLREDSSASES
Ga0208546_100139011	F013517	N/A	MFESLFAAVLPVMKELLWAAAGMALTFVMTKLSHGWT
Ga0208546_100139012	F002738	N/A	MLVTAMSIDTYGLPSEQYVKFFKDNVRFAARLYLDTCNILSAEGAGNVDFKTVLDMYQEAVYQTNDDCRRYQKANNPEAIKDTDLLGIYPSREEMMEEIKLVSAKVEALTEYVTELVKVTTKGLEGIAGNLVD
Ga0208546_100139013	F043890	N/A	MQKTSSWATCNPNSIEKLQINCIDEEDGSMTIHIEWDENDFDLQWWTDLGEEGQKAFMIKALTDACDCYVD
Ga0208546_100139015	F002333	N/A	MSTQTQLELNAAQAAIYTRSNIRRAFQDFDDTEVAGIYLRDDDCLVVRRDGSEQTYNRELIKVAFANYTHRLKDFFSYLGSNYRGPSVWHNNAYILFKGWNYTHALGHLTSNAKLQAHWADKFIHVPDTNKVLHLLQSDQTDLGHLVAPDGLRLSNRPIDLDSDMEADQSTPVMGEPWCSCGSYQRQLSNLSDFASEIQGFKPWCIHLSWFNKYRELLCKRTEARNASPSGTPEKCVAWWYAPPVDHISDGRFVLLYTNSGAQAPLTHWRTYKPKEVFTQHDAWDLFFNMMEAGYVPFPGTSLPQLKSALKKQ
Ga0208546_100139017	F097198	N/A	MLQFEMGPEEAFWQEKMIRSINECSSISELKEMAILLTKIATMRQVAIKGLVKDAMDLMSNQVDRDILNRLKG
Ga0208546_10013904	F022401	N/A	MDHPHEPIDAIKTWQDWYKSHRIVAQLDKPLITKDSRENMHDTTHATDPFKESDTKAMWMQKAKEHFADTLAEYQYELSGKDFYKAFYQAAYEYLEATQKEYERTKELVDMLRYKELGQD
Ga0208546_10013906	F008128	N/A	MEAVSVPTITLSFAVDVEISYNSFDGKTTEDIAYALQDELHDLLFELDQVTGVYTVCTSINSND
Ga0208546_10013909	F025982	N/A	MDCHLHAVKDFELQLEMNKLQIDMVKDGGEVAPYCMDEYEDLEQKKLKLLVGKRFHQNASNAYWYYLQKEKTNK