Scaffold Ga0208546

Basic Information
Taxon OID	3300025585 Open in IMG/M
Scaffold ID	Ga0208546_1000903 Open in IMG/M
Source Dataset Name	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_0.19_D_<0.8_DNA (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

Scaffold ID

Ga0208546_1000903 Open in IMG/M

Source Dataset Name

Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_0.19_D_<0.8_DNA (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	9759
Total Scaffold Genes	28 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	13 (46.43%)
Novel Protein Genes	5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (40.00%)
Associated Families	5

Scaffold Components

Scaffold Length (bps)

9759

Total Scaffold Genes

28 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

13 (46.43%)

Novel Protein Genes

5 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

2 (40.00%)

Associated Families

Taxonomy
All Organisms → Viruses	(Source: UniRef50)

Taxonomy

All Organisms → Viruses

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location
Location Name	USA: Delaware Bay
Coordinates	Lat. (^o)	39.283	Long. (^o)	-75.3633	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Delaware Bay

Coordinates

Lat. (^o)

39.283

Long. (^o)

-75.3633

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F012017	Metagenome / Metatranscriptome	284	N
F022191	Metagenome	215	N
F034162	Metagenome	175	Y
F042315	Metagenome	158	N
F105021	Metagenome	100	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0208546_100090311	F042315	AGGTGG	MKKQKSYPRNWALEHKPSNKWQSVLVQRRDPNCRDAKRKAKRLPDVSPTELYAIIDEGYHYFWNRRGRVPPQTTAIRWAKA
Ga0208546_100090313	F105021	N/A	MNTLNKLLARWGLQLTRTDAIAEQSDLTIGYAALEAERNDLREQTKELKRKLACKTAGEYYWRKQAKEARG
Ga0208546_100090322	F022191	AGG	MPEGIKTDGSHGRTTYSPQKLVNDLAVATLEGRGLGLKKHPRLGYVTEEDKRLFQRIVGITVEEFNQRLIGKLDNLADRIVDRMLDTVEDTPLNSLGFNLAVAIDKRQRLAGLNATQGANVNIQVNNYGSLSKEEIVARLSGKAPVPTIQAAPVELPNANDIDVKKPVAATVAG
Ga0208546_100090328	F012017	N/A	MAQKRILIGTPLKGDIPKSYFRTSLQMATAQVPDVKLDWILLDGPAVQIARNEIAHYAVEQKFDELIFWDKDVLAMRNGEDVTGSALMRLIGHDRDIVTAVYSSRSLDTHWHVHPIKGEEPDEAGLQRVERASIGFCKIKVPVFKKIALANIDRAAMLVDPNKSPKLVPELFPMELRGRNTPQHRLQQIWAALSEVKNDDALRARIERELTIRYDEPNSYISEDFGFCDLARAAGYDIWMDTLMVLGHQASVTVPIESAKLLEMLSEPWRKEELAIIKQQMLEAQAAKKK
Ga0208546_10009037	F034162	N/A	MTRWVDAGWRLPAAANLPVEVVLADGTTEKRDTLTGDWRPVVRWRTVDKEAGSRKKKA

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0208546_1000903

Overview

Ecosystem & Geography

Associated Families

Sequences