Scaffold Ga0208546_1000023

Overview

Basic Information

• Taxon OID: 3300025585
• Scaffold ID: Ga0208546_1000023
• Source Dataset Name: Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_0.19_D_<0.8_DNA (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 87156
• Total Scaffold Genes: 178
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 98 (55.06%)
• Novel Protein Genes: 17
• Novel Protein Genes with Ribosome Binding Sites (RBS): 12 (70.59%)
• Associated Families: 16

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location

• Location Name: USA: Delaware Bay
• Coordinates
  • Lat. (^o): 39.283
  • Long. (^o): -75.3633

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000345	Metagenome / Metatranscriptome	1253	Y
F004208	Metagenome / Metatranscriptome	448	Y
F004255	Metagenome / Metatranscriptome	446	Y
F008358	Metagenome / Metatranscriptome	334	Y
F019061	Metagenome / Metatranscriptome	232	Y
F032252	Metagenome / Metatranscriptome	180	Y
F035276	Metagenome / Metatranscriptome	172	Y
F037191	Metagenome / Metatranscriptome	168	Y
F043358	Metagenome / Metatranscriptome	156	Y
F047649	Metagenome / Metatranscriptome	149	N
F055721	Metagenome / Metatranscriptome	138	Y
F058099	Metagenome / Metatranscriptome	135	Y
F067687	Metagenome / Metatranscriptome	125	N
F077968	Metagenome / Metatranscriptome	117	Y
F081278	Metagenome / Metatranscriptome	114	Y
F105033	Metagenome / Metatranscriptome	100	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208546_1000023106	F000345	GGAG	MTEPNQFGKALQEWWDSDAFKQLQKENEEAKQRAVGKYFMLPEQDKLDMVQAICLIMCNAEKEGCSHRGLMDKLGIYPSGFFVSELMTVHNSLWGYYHDKKVEKELKDDLDALEDFVKKD
Ga0208546_1000023152	F058099	N/A	MDKEIMTTLLDQAADGNGILQILDALYDGMDSGESSQDFCPTLDEIQF
Ga0208546_1000023162	F081278	N/A	MIRRHATAADFTRWEQSAAVMTDAELIYAAADCRKVEALWRGVDGMVEGFYSDQAATYGTELYRRRQNHR
Ga0208546_100002317	F008358	N/A	MNASYIYFIIFFCIGYLILTDSSIARGFYLLTQLVQVQYEKVKWWALHSPSNFIVRWLIHRRSMRLAEELMKEFDEKNKKD
Ga0208546_100002318	F105033	GAGG	MSRTWRKIDYIGKCALRHPKTSNERKHLIGILQDNQYEDYQISGLNHLHHRLTNCPTANYDRVVSGYLQEDYKMI
Ga0208546_100002324	F004208	AGGAG	MTYKLNPEAKSFSYTREELFQCVKKIVAHPHTHLTSHDEARALAILLVFDDYLANFTHRDGDGEYYIPECDELDFLDFVRFKLGISDYDGVDVDEVLK
Ga0208546_100002329	F037191	GGAG	MTVAEWIEKLKEFPLDQEVKITDGHKYHFYEGDFDFQLFEDVDGSTFVDIGIGGFEGDEE
Ga0208546_100002339	F035276	GGAGG	MSSYISCYNQETRELEHYKVPYDVSVYIQQLECEIKYGSGGVKRLYPFRFGEEE
Ga0208546_100002341	F019061	GGAG	MTEPTDTEILEFLLNQFKPHSLKMNGESDWVFINSGFPMNRAKGKSARDAVINAMEAK
Ga0208546_100002349	F077968	GGAGG	MTDTWKKWNIYTSIHLFEYCVFSWRNLMWMHLDGFKDEDRMRELFWYYLNYGNINTYYE
Ga0208546_100002350	F055721	GGA	MSKEEYYKWIEENDTYPEHSHQWIVKTYIDNQMFYRNFGPFETKKEAKEWIVNYKKKYTTKGFITRYSIQALCEVL
Ga0208546_100002362	F043358	GGA	MKVYDYRIVEDLNLKTLKPYFFIQRYNIKDQKYFLYSDATFQTLQEAQEAIRLLRKYNEPLYHYVE
Ga0208546_100002372	F019061	GGA	MTNEPTDTEILEFLLNQFKPHSLKMNGESDWVFINTGFPMNKAKGKSARDAVISAMEAK
Ga0208546_100002374	F047649	AGAAGG	MRYYETRTYEHQCDFDAKNRAEKASQDYYKKWINLRKEVRELVKTQNISITPEFAKLIGL
Ga0208546_100002378	F067687	N/A	MTNLSPQAQAIVDAFDAEYYQKARNRQDALAAVLRVLADNVAPDDYKCFYGDREYDAGMEGRNDEIREAILSIATELEAN
Ga0208546_100002379	F032252	GGAGG	MKLYRYKKDGCLYNLYEMLMPYYELKAVPYFPNQGILAKSKRSISMNDFEVVAER
Ga0208546_100002391	F004255	N/A	MKLTEKAQIYRNVWCCAYQRRFLYKGTPRERREHETILMCLKMKNAKWWEFDTEKPHFIE