Scaffold Ga0209386_1028875

Overview

Basic Information

• Taxon OID: 3300025582
• Scaffold ID: Ga0209386_1028875
• Source Dataset Name: Arctic peat soil microbial communities from the Barrow Environmental Observatory site, Barrow, Alaska, USA - NGEE Permafrost154B-two (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1025
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrosopumilales → Nitrosopumilaceae → Nitrosopumilus → unclassified Nitrosopumilus → Nitrosopumilus sp. (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Permafrost → Arctic Peat Soil → Arctic Peat Soil Microbial Communities From The Barrow Environmental Observatory Site, Barrow, Alaska, Usa

Source Dataset Sampling Location

• Location Name: USA: Barrow Environmental Observatory site, Alaska
• Coordinates
  • Lat. (^o): 71.299
  • Long. (^o): -156.61

Associated Families

Family	Category	Number of Sequences	3D Structure?
F068786	Metagenome / Metatranscriptome	124	Y
F093804	Metagenome / Metatranscriptome	106	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209386_10288751	F093804	AGGTGG	MANPESKPVDDLSNRSLKKIGEIDPKLFESNNEKEIEVRSWKKQKSETWHIYLDTNTGHLRKWKSSSS
Ga0209386_10288752	F068786	N/A	VTSEKKVDLVNSPEVQVMKEKEKDFIDIDFKHLEEQKFYRVEYEGDVYAVEKLADGKIAFYEVVE