Scaffold Ga0209304_1000762

Overview

Basic Information

• Taxon OID: 3300025577
• Scaffold ID: Ga0209304_1000762
• Source Dataset Name: Pelagic marine microbial communities from North Sea - COGITO_mtgs_100423 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 21761
• Total Scaffold Genes: 37
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 24 (64.86%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Pelagic → Unclassified → Pelagic Marine → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location

• Location Name: Germany:Helgoland, sampling site Kabeltonne, North Sea
• Coordinates
  • Lat. (^o): 54.1883
  • Long. (^o): 7.9
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F011200	Metagenome / Metatranscriptome	294	Y
F021880	Metagenome	217	Y
F047022	Metagenome	150	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209304_100076212	F011200	GAGG	MDILIPLTIIVVVLVWSVKKFKPELWNKLISFISKN
Ga0209304_100076213	F047022	N/A	MHIKIPNFLSIEECKLVEKVLLEKEQEILALPLTTDMYTGTTARYSYYNFLNYIPEIDITKKFFALPIMQDEDEFWIQCWVNILNKDEGIPMHNHGHPENIFYACNIFISGPDDCFTFYDDNGHVPNNIGELHLIDCHLWHGVKENTNDQPRLSIACDIHFKDPKHFENYEQRIVHAKRN
Ga0209304_100076214	F021880	N/A	MVEVFDCPYISKVNNKQFQQDLINYTKETKCCDMEVCVHPKIQSDLKIDQAFTVIDNSINNLFKTYLGTDKFEFTKKNVWGYYASKGSQLQSVVHNHAFKKEKGLQLSALMYITPTKLGTSFADFKIEPEINRWYLWHSGLYHHPEDGITPKDRIVLALSSVINRCT