Scaffold Ga0210076_1005145

Overview

Basic Information

• Taxon OID: 3300025567
• Scaffold ID: Ga0210076_1005145
• Source Dataset Name: Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - MayberryNW_CattailA_D2 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2990
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrososphaeria → Nitrososphaerales → Nitrososphaeraceae → unclassified Nitrososphaeraceae → Nitrososphaeraceae archaeon (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Wetlands → Unclassified → Natural And Restored Wetlands → Natural And Restored Wetland Microbial Communities From The San Francisco Bay, California, Usa, That Impact Long-Term Carbon Sequestration

Source Dataset Sampling Location

• Location Name: USA: San Francisco Bay, California
• Coordinates
  • Lat. (^o): 38.05241603
  • Long. (^o): -121.76907401

Associated Families

Family	Category	Number of Sequences	3D Structure?
F020671	Metagenome / Metatranscriptome	222	Y
F079177	Metagenome / Metatranscriptome	116	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0210076_10051452	F079177	GAGG	MNFTSKFIQAALAVSFSKVEEIKNNRIKELLEIKSKIKEDPIVVENWFDNEIDKISNVMENNSSSTDIESLINKIK
Ga0210076_10051453	F020671	N/A	YEDSWWNNTTYEIECKGEIECYDKINEIHPKYPLIIYNHARRYKQRLKKIIITGKVKV