Scaffold Ga0208303_1030654

Overview

Basic Information

• Taxon OID: 3300025543
• Scaffold ID: Ga0208303_1030654
• Source Dataset Name: Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1504_2 Viral MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1433
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location

• Location Name: USA: Chesapeake Bay
• Coordinates
  • Lat. (^o): 37.1
  • Long. (^o): -76.0972

Associated Families

Family	Category	Number of Sequences	3D Structure?
F053649	Metagenome / Metatranscriptome	141	N
F085561	Metagenome	111	N
F099208	Metagenome	103	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0208303_10306541	F085561	N/A	YSFRRKKDSYSDSKLSLSDCEDQLRTWASNQAEKELERRPEGARLRQLKELEQKALDTVMEAGTPDSLAIALNEVSKKIGLSWNQDLTALPNIKNEN
Ga0208303_10306542	F053649	AGG	MTYIVIKHTNYEGITPSVSIEDNEVYDLETAQAVKKVCELKNTNKDTTFHLLNVAYANLGKQDSNIEVVKSDKDFDYNQDKQLSWAF
Ga0208303_10306543	F099208	AGGA	MGILVEQKKEEFIGQGFSKKEALTKAHEWCEQTNTCRGCSQVVRLDWWSWKQGYCKDCID