Scaffold Ga0210061_1001387

Overview

Basic Information

• Taxon OID: 3300025537
• Scaffold ID: Ga0210061_1001387
• Source Dataset Name: Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - MayberryNW_CattailC_D1 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3755
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (20.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrosopumilales → Nitrosopumilaceae → Nitrosopumilus → unclassified Nitrosopumilus → Nitrosopumilus sp. (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Wetlands → Unclassified → Natural And Restored Wetlands → Natural And Restored Wetland Microbial Communities From The San Francisco Bay, California, Usa, That Impact Long-Term Carbon Sequestration

Source Dataset Sampling Location

• Location Name: USA: San Francisco Bay, California
• Coordinates
  • Lat. (^o): 38.05241603
  • Long. (^o): -121.76907401

Associated Families

Family	Category	Number of Sequences	3D Structure?
F031394	Metagenome	182	Y
F068786	Metagenome / Metatranscriptome	124	Y
F093804	Metagenome / Metatranscriptome	106	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0210061_10013871	F031394	N/A	MKKSVFTFGLLTISLVMIAVMPILNNNHSFANTAIAQKYDKYGNSSYSQYPTDDKKYECRTGPFEGFFVSS
Ga0210061_10013872	F093804	AGGTGG	MANSSAKPVDDLRNRSLKKIGELDLKTFESNKEKEIEIKSEKKQKLEKWHVYLDTNMGHLRKWKDTN
Ga0210061_10013873	F068786	N/A	MSEKKVDLVNSSEVQVMKEKEKDFIDIDVQRLEEGKYYRVEYEGDVYAVEKSTDDKIVFYEVVE