Scaffold Ga0208148_1009262

Overview

Basic Information

• Taxon OID: 3300025508
• Scaffold ID: Ga0208148_1009262
• Source Dataset Name: Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Spr_20_<0.8_DNA (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3069
• Total Scaffold Genes: 13
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (69.23%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → environmental samples → uncultured marine virus (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location

• Location Name: USA: Delaware Bay
• Coordinates
  • Lat. (^o): 39.283
  • Long. (^o): -75.3633

Associated Families

Family	Category	Number of Sequences	3D Structure?
F018266	Metagenome / Metatranscriptome	236	N
F046634	Metagenome	151	Y
F076505	Metagenome	118	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0208148_100926212	F018266	GAGG	MFRVILEGKFRENPINLSRAVKLLYNQDFTGSIRLENLLWWKKYFLKVIHLRVLYPKTGYIQIVKIYRDKKPSIRVVTIPSSPDKRELLVLNKIYGGNNG
Ga0208148_10092626	F076505	N/A	MTFHIWIGLIAILSSFVMSFLGVILMIHLDFWTGVLLTITGMVCLLRAIPRTNEEI
Ga0208148_10092628	F046634	AGGAG	MTTQPSFVPYTESKSAEDRIAYVKANPHKYMPKAQYDLVKSLHSKIEALDSKMNEILAKK