Scaffold Ga0209557_1011866

Overview

Basic Information

• Taxon OID: 3300025483
• Scaffold ID: Ga0209557_1011866
• Source Dataset Name: Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - Saanich Inlet SI074_LV_120m_DNA (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3213
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (100.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Dojkabacteria → Candidatus Dojkabacteria bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Marine → Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean

Source Dataset Sampling Location

• Location Name: Saanich Inlet, British Columbia, Canada
• Coordinates
  • Lat. (^o): 48.6
  • Long. (^o): -123.5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F017163	Metagenome / Metatranscriptome	242	Y
F048584	Metagenome	148	N
F055202	Metagenome / Metatranscriptome	139	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209557_10118662	F048584	GGAG	MNDYDLTQYCDYVARYIARDASDIEQAIDWAHESADGSEYVVYNAKAHEVCQNCNIDQGEDFFSECYGGEHGKSYDDIAAIMAYGEINARICARLWEIFEEREEEAA
Ga0209557_10118663	F055202	AGGAGG	MTRRQNKAIRQQVKASLIQIALGFAAGLAIATVLSMNL
Ga0209557_10118664	F017163	GGAG	MEFITLDLPEHWSSALFYDDTSGFEYEDDTQFQAFCEWAVKNYGTSEPVDMEEDGNFATYHDAKKFGVLACNVHKYTFIVNNGNPNTSAMTTLAHTMK