NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208389_1041760

Scaffold Ga0208389_1041760


Overview

Basic Information
Taxon OID3300025470 Open in IMG/M
Scaffold IDGa0208389_1041760 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Crystal Bog, Wisconsin, USA - CBH12Aug09 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Bioenergy Institute (JBEI), DOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)893
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Candidatus Acidoferrales → Candidatus Acidoferrum → Candidatus Acidoferrum panamensis(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater → Freshwater Microbial Communities From Crystal Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location NameCrystal Bog, Wisconsin, USA
CoordinatesLat. (o)46.0072Long. (o)-89.6063Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F049989Metagenome / Metatranscriptome146Y
F104297Metagenome100Y

Sequences

Protein IDFamilyRBSSequence
Ga0208389_10417601F049989GGAGMSNPTDAYEQYRVPEWFQDELTRIGGVNRYDKPNFIVCWGQGGEDECFYRAGAHWDVPGQPSIHGYRNLLVGGGTPSWCLLKWDDAFVYGTPESWYVANYDADSDLQTLGEYGYQGRYTLLYNMCWRDMQNGKLYIESMPLNSFILNLLVPIILQSKDISLEKYKAATKEMQEKEEAEELTRIEDSMRDASLAFKGPSSYARQGCRTWHID
Ga0208389_10417602F104297N/AELITPAYDAFLDGKPSRREMQKAFQKMGENDGNLMLMVDNLNHVANLLCEKAGVTAGEIEAYTAKKAAEMKAFTEAQEKAAAETTNVQPD

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