Basic Information | |
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Taxon OID | 3300025470 Open in IMG/M |
Scaffold ID | Ga0208389_1041760 Open in IMG/M |
Source Dataset Name | Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBH12Aug09 (SPAdes) |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Bioenergy Institute (JBEI), DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 893 |
Total Scaffold Genes | 2 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 1 (50.00%) |
Novel Protein Genes | 2 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (50.00%) |
Associated Families | 2 |
Taxonomy | |
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All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Candidatus Acidoferrales → Candidatus Acidoferrum → Candidatus Acidoferrum panamensis | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater → Freshwater Microbial Communities From Crystal Bog Lake, Wisconsin, Usa |
Source Dataset Sampling Location | ||||||||
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Location Name | Crystal Bog, Wisconsin, USA | |||||||
Coordinates | Lat. (o) | 46.0072 | Long. (o) | -89.6063 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F049989 | Metagenome / Metatranscriptome | 146 | Y |
F104297 | Metagenome | 100 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0208389_10417601 | F049989 | GGAG | MSNPTDAYEQYRVPEWFQDELTRIGGVNRYDKPNFIVCWGQGGEDECFYRAGAHWDVPGQPSIHGYRNLLVGGGTPSWCLLKWDDAFVYGTPESWYVANYDADSDLQTLGEYGYQGRYTLLYNMCWRDMQNGKLYIESMPLNSFILNLLVPIILQSKDISLEKYKAATKEMQEKEEAEELTRIEDSMRDASLAFKGPSSYARQGCRTWHID |
Ga0208389_10417602 | F104297 | N/A | ELITPAYDAFLDGKPSRREMQKAFQKMGENDGNLMLMVDNLNHVANLLCEKAGVTAGEIEAYTAKKAAEMKAFTEAQEKAAAETTNVQPD |
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