Scaffold Ga0208455_1027129

Overview

Basic Information

• Taxon OID: 3300025453
• Scaffold ID: Ga0208455_1027129
• Source Dataset Name: Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_4_40 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1333
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Peatland → Peatland Microbial Communities From Minnesota, Usa, Analyzing Carbon Cycling And Trace Gas Fluxes

Source Dataset Sampling Location

• Location Name: USA: Minnesota
• Coordinates
  • Lat. (^o): 47.5028
  • Long. (^o): -93.4828
  • Depth (m): .4 to .5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004185	Metagenome / Metatranscriptome	449	Y
F015005	Metagenome / Metatranscriptome	258	Y
F089290	Metagenome	109	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208455_10271291	F089290	AGGTGG	VPEDYGRQEEISVEGLIEEQRRLARSKTFFEKVVGALCVAGLLKERLAASSDAAVGQLMLDHVWSDLNLLGPESVIVEIASERLLHSAPSQVK
Ga0208455_10271292	F004185	AGGAGG	MSLQKEFIRDGKRRIIGSVTTGYVGSFETIVRDEQNHVTGSTSERFNTTRDEHDSLISINRADAGLLIGNHNKK
Ga0208455_10271293	F015005	N/A	MPTDAIECPLCLGEGELKRTEVLDRLGVKDLARVAQLSAEEAFRLLLGKHKDDQQRVWLRFETELAKRMAEIRDRHKDELHATQSERDNLTRRVEDCLREVAQLRERNQELEAEMSKVSRIGKREEMDFADEARTWAGMSISEKLPRNGDFIVAYRDPSAASVEPRMLVDNKDKAVVTEGDIAKLVRDAKERSLSVAVLVA