NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208426_1000333

Scaffold Ga0208426_1000333


Overview

Basic Information
Taxon OID3300025451 Open in IMG/M
Scaffold IDGa0208426_1000333 Open in IMG/M
Source Dataset NameAqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Spr_0.19_>0.8_DNA (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)7722
Total Scaffold Genes12 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (58.33%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (40.00%)
Associated Families5

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location
Location NameUSA: Delaware Bay
CoordinatesLat. (o)39.283Long. (o)-75.3633Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000722Metagenome / Metatranscriptome922Y
F011919Metagenome285N
F027779Metagenome193Y
F057151Metagenome / Metatranscriptome136Y
F077300Metagenome117Y

Sequences

Protein IDFamilyRBSSequence
Ga0208426_10003332F077300AGGAMSNPNEQYDRLHDHCQAIARERDWYKSEVDRLTDELELAHEALRRQMP
Ga0208426_10003334F011919N/AMNDQMQMFHPSNGLEGYRERLVQRNTVTISPSAKPTSAAAALRALPRTGTYRKRIYDYLIQIGGATDEEIENALGISGNTVRPTRGSLVKDRLVVETDVERPTKSGNMAIVWMAL
Ga0208426_10003335F000722N/AMSDQPFNEIGITNETRKAMYPDNYTDKMGHAFKTMLDDIFRPMHIPRPDPVDHSILIDELEMMYEAHMTIGGQQNRFNASVLKAALNVIRAL
Ga0208426_10003337F027779N/AMAVIPANPKIVGSKPYTGNNDGEAAGPRAGMDEWIRQAIKHGKGAFWNNGSWGVRMMRGSETSLSVHATGRAVDLSYRMSQQHQGANRKDACAFINIVLENANALGVECVLDYIGPFGRGWRCERQSWQKYTKETIHGVPGDWFHVEISPAMADNPNAVKQAFDRVFTEIPH
Ga0208426_10003339F057151GGAMNNHQYFAQLNDDNVVIDVAVVTYEFMQENPERYLGQWVETFFNLPNKTYAGIGMIYDEITKDFYAPIPTPIPDETPNS
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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