Scaffold Ga0208426_1000005

Overview

Basic Information

• Taxon OID: 3300025451
• Scaffold ID: Ga0208426_1000005
• Source Dataset Name: Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Spr_0.19_>0.8_DNA (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 73670
• Total Scaffold Genes: 152
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 114 (75.00%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 6 (100.00%)
• Associated Families: 6

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location

• Location Name: USA: Delaware Bay
• Coordinates
  • Lat. (^o): 39.283
  • Long. (^o): -75.3633

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003826	Metagenome / Metatranscriptome	466	Y
F008244	Metagenome / Metatranscriptome	336	Y
F018683	Metagenome / Metatranscriptome	233	Y
F024289	Metagenome / Metatranscriptome	206	Y
F066582	Metagenome	126	Y
F074569	Metagenome / Metatranscriptome	119	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208426_1000005131	F008244	AGGAG	MFNASSHAFIDGVSDFKLKFVDQAVKHDGIKNALNGFVEAQRKYTKTAADAGMQSMMALGMIFSSKTFYDDVSEQIKTLVPATDLFKTTKAKAKKAV
Ga0208426_100000561	F003826	AGAAGG	MLDPITIGLAFTAAQSAVSHIKQAIALGKDINSLAGQFNTFFDSADSVHRARTEAKVKAALLGKTDAELGKEALQIAMHSNSLREAERELKDMIIWQLGKPQIWEDMIKERNRLFKERAQARREEEERQLEHKKKMANQFMIAMYFIGFSIVAFCTIMAGVGIYGAIEDKRIYEEKVEARRQSVYRQHQARLAEDKKALADYAKN
Ga0208426_100000580	F074569	GGCGG	MNNSITEQLLALAYLKEDEVYDSSERDEFDCLIALIEDGTIDTFEELAKYGVEE
Ga0208426_100000582	F018683	AGGA	MLVIKRFKQTQKFRVIVGPACFYSTAKQIRNNVGDFYKCNAATQKALDALEFTRSGDGIADQCACGIAGTWEDLAIQLTMA
Ga0208426_100000583	F024289	AGGA	MQALTERQKTLIVNNVVKAVKNIDNLNKTGYNFLYLCSGFIAHYDMYGFISNYSDGTLEQDILSYAGQNQWKNFRPGERDYEYYMAKADVYNRILAEIA
Ga0208426_100000590	F066582	GGA	MTTQHYNRLENGPMDEIDAAIWSGDLFHNRANIAEFREQMARWERGLQSCEDILSEVPERSNDGK