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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300025443 Open in IMG/M |
| Scaffold ID | Ga0208081_1000342 Open in IMG/M |
| Source Dataset Name | Arctic peat soil from Barrow, Alaska - NGEE Surface sample 415-1 shallow-092012 (SPAdes) |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 11568 |
| Total Scaffold Genes | 13 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 8 (61.54%) |
| Novel Protein Genes | 4 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (50.00%) |
| Associated Families | 4 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Nakamurellales → Nakamurellaceae → Nakamurella → unclassified Nakamurella → Nakamurella sp. PAMC28650 | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Terrestrial → Soil → Unclassified → Permafrost → Arctic Peat Soil → Arctic Peat Soil Microbial Communities From The Barrow Environmental Observatory Site, Barrow, Alaska, Usa |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Barrow Environmental Observatory site, Barrow, Alaska | |||||||
| Coordinates | Lat. (o) | 71.2999 | Long. (o) | -156.61 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F047997 | Metagenome | 149 | Y |
| F051569 | Metagenome | 144 | Y |
| F077975 | Metagenome | 117 | Y |
| F096253 | Metagenome | 105 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0208081_100034211 | F077975 | N/A | MTTHEEHVVAAEDAATGPATTSVTDLGDAAAAADSGVICQAESVEIGIGQDGADPFDATFLLAGTDPQGREVAVWIRLTPTTINDLTDQLTQVLVAQQQILGGNGFHHTDDVDTDRTAADEDAQDTGGGRAKRFFDPLGIRHLKDRSPRTTVMLGVAIASLMLLAFVLQQIRR |
| Ga0208081_100034212 | F096253 | N/A | MTPTSRHGVRGRWLVLVVILWLILASSITLEQGQESAAQWGSAATLAVLGILVLLAVCRVALIPVRGLVRRVRRWAAGRIR |
| Ga0208081_10003426 | F051569 | AGGA | MTIITESAALTGRLSVNTTYTAAPLDQVNTWVSQWGTSLQVLGGTILAICMVLVGIKLGAKSVASNGASTGHREAVGAIFGLVIAGVLIGAALIIVPLFVGVGSNSGTTPPAAPAPAATAGG |
| Ga0208081_10003427 | F047997 | GGGGG | LTGNDDQVIYSDDYTRLFTYQSRQFTAGDLSLKAINGVQWNAALPAAVIAVAATVVTAIGLWVVGFSPWWSALLFPVPALVVYVRMAKDRAGGLTESEKFRLAWNYRYSQPREVLGLAENTEPSDFAWDVIFWLPPAQPSAIGAPR |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |