Scaffold Ga0208646_1001780

Overview

Basic Information

• Taxon OID: 3300025425
• Scaffold ID: Ga0208646_1001780
• Source Dataset Name: Saline lake microbial communities from Ace Lake, Antarctica - Antarctic Ace Lake Metagenome 02UK8 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 9788
• Total Scaffold Genes: 13
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (23.08%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Lake → Saline Lake Microbial Communities From Various Lakes In Antarctica

Source Dataset Sampling Location

• Location Name: Ace Lake, Antarctica
• Coordinates
  • Lat. (^o): -68.4725
  • Long. (^o): 78.188

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008137	Metagenome / Metatranscriptome	338	Y
F032272	Metagenome	180	Y
F088749	Metagenome	109	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208646_100178010	F088749	GGA	MSNIDNKISFISGFALTSTWTMPLYNLGMALLLGIVGGFGGLVGRWVYKKIWPDV
Ga0208646_100178011	F032272	N/A	MYNKSVLSKILKFAEEEKTISVRRLRTLTLTNKNTPMKIWGTTLDGERYNGREVFTFTGPSRSPGVGYNYNAKGYMIFFDMNKGEYRTFVYNRIDKLELNGITFNVN
Ga0208646_100178013	F008137	N/A	MSFWEIKVDFKDARKVLVIPNITNASNIEKDSFVDVLYNHIIALDKVGDYYWNIILPKPVKKLNLENVKQHIAPLSGDMMNQRAFPPLDLIKIMKDVEYDVIYSHLPDWVQTGRYKNLINTKVIGYCHWWEMKSCNGIDRRAGKPKWMWLPIELLGVSQMETCYLNTQDQKNRVLEEARETFND