Basic Information | |
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Family ID | F088749 |
Family Type | Metagenome |
Number of Sequences | 109 |
Average Sequence Length | 55 residues |
Representative Sequence | MNMDNKISFISGFTLTSIWTMTLYEIGLAFLLGLVGGIGGLVGRWIIKKLGWFGQK |
Number of Associated Samples | 94 |
Number of Associated Scaffolds | 109 |
Quality Assessment | |
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Transcriptomic Evidence | No |
Most common taxonomic group | Unclassified |
% of genes with valid RBS motifs | 18.75 % |
% of genes near scaffold ends (potentially truncated) | 4.59 % |
% of genes from short scaffolds (< 2000 bps) | 15.60 % |
Associated GOLD sequencing projects | 79 |
AlphaFold2 3D model prediction | Yes |
3D model pTM-score | 0.50 |
Hidden Markov Model |
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Most Common Taxonomy | |
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Group | Unclassified (77.064 % of family members) |
NCBI Taxonomy ID | N/A |
Taxonomy | N/A |
Most Common Ecosystem | |
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GOLD Ecosystem | Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous (18.349 % of family members) |
Environment Ontology (ENVO) | Unclassified (56.881 % of family members) |
Earth Microbiome Project Ontology (EMPO) | Free-living → Saline → Water (saline) (74.312 % of family members) |
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Predicted Topology & Secondary Structure | |||||
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Classification: | Transmembrane (alpha-helical) | Signal Peptide: | No | Secondary Structure distribution: | α-helix: 55.95% β-sheet: 0.00% Coil/Unstructured: 44.05% | Feature Viewer |
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Structure Viewer | |
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Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100 | pTM-score: 0.50 |
Powered by PDBe Molstar |
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Pfam ID | Name | % Frequency in 109 Family Scaffolds |
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PF12518 | DUF3721 | 28.44 |
PF14550 | Peptidase_S78_2 | 13.76 |
PF01165 | Ribosomal_S21 | 2.75 |
PF03237 | Terminase_6N | 2.75 |
PF13392 | HNH_3 | 1.83 |
PF11397 | GlcNAc | 1.83 |
PF05050 | Methyltransf_21 | 0.92 |
PF13640 | 2OG-FeII_Oxy_3 | 0.92 |
PF00856 | SET | 0.92 |
PF07638 | Sigma70_ECF | 0.92 |
PF04466 | Terminase_3 | 0.92 |
COG ID | Name | Functional Category | % Frequency in 109 Family Scaffolds |
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COG0828 | Ribosomal protein S21 | Translation, ribosomal structure and biogenesis [J] | 2.75 |
COG1595 | DNA-directed RNA polymerase specialized sigma subunit, sigma24 family | Transcription [K] | 0.92 |
COG1783 | Phage terminase large subunit | Mobilome: prophages, transposons [X] | 0.92 |
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Name | Rank | Taxonomy | Distribution |
Unclassified | root | N/A | 77.06 % |
All Organisms | root | All Organisms | 22.94 % |
Visualization |
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Scaffold | Taxonomy | Length | IMG/M Link |
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3300000116|DelMOSpr2010_c10001655 | All Organisms → Viruses → unclassified viruses → unclassified DNA viruses → unclassified dsDNA viruses → Prokaryotic dsDNA virus sp. | 13405 | Open in IMG/M |
3300000117|DelMOWin2010_c10047010 | All Organisms → Viruses → Predicted Viral | 1938 | Open in IMG/M |
3300000929|NpDRAFT_10037744 | All Organisms → Viruses → unclassified viruses → unclassified DNA viruses → unclassified dsDNA viruses → Prokaryotic dsDNA virus sp. | 15481 | Open in IMG/M |
3300004369|Ga0065726_17026 | All Organisms → Viruses | 11961 | Open in IMG/M |
3300005913|Ga0075108_10002635 | Not Available | 7920 | Open in IMG/M |
3300005936|Ga0075124_10171449 | All Organisms → Viruses → unclassified viruses → unclassified DNA viruses → unclassified dsDNA viruses → Prokaryotic dsDNA virus sp. | 805 | Open in IMG/M |
3300006734|Ga0098073_1000145 | All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | 27270 | Open in IMG/M |
3300006752|Ga0098048_1041736 | All Organisms → Viruses → Predicted Viral | 1462 | Open in IMG/M |
3300006793|Ga0098055_1076696 | All Organisms → Viruses → Predicted Viral | 1318 | Open in IMG/M |
3300006793|Ga0098055_1239707 | All Organisms → Viruses → unclassified viruses → unclassified DNA viruses → unclassified dsDNA viruses → Prokaryotic dsDNA virus sp. | 683 | Open in IMG/M |
3300006802|Ga0070749_10004756 | All Organisms → Viruses → unclassified viruses → unclassified DNA viruses → unclassified dsDNA viruses → Prokaryotic dsDNA virus sp. | 9001 | Open in IMG/M |
3300006802|Ga0070749_10019837 | Not Available | 4267 | Open in IMG/M |
3300006810|Ga0070754_10003205 | All Organisms → Viruses → unclassified viruses → unclassified DNA viruses → unclassified dsDNA viruses → Prokaryotic dsDNA virus sp. | 11641 | Open in IMG/M |
3300006810|Ga0070754_10137044 | All Organisms → Viruses → Predicted Viral | 1180 | Open in IMG/M |
3300006920|Ga0070748_1076688 | All Organisms → Viruses → Predicted Viral | 1295 | Open in IMG/M |
3300009001|Ga0102963_1066277 | All Organisms → Viruses → Predicted Viral | 1485 | Open in IMG/M |
3300009426|Ga0115547_1103659 | All Organisms → Viruses → unclassified viruses → unclassified DNA viruses → unclassified dsDNA viruses → Prokaryotic dsDNA virus sp. | 936 | Open in IMG/M |
3300009529|Ga0114919_10225622 | All Organisms → Viruses → Predicted Viral | 1330 | Open in IMG/M |
3300011118|Ga0114922_10088591 | All Organisms → Viruses → Predicted Viral | 2660 | Open in IMG/M |
3300017950|Ga0181607_10624705 | All Organisms → Viruses → unclassified viruses → unclassified DNA viruses → unclassified dsDNA viruses → Prokaryotic dsDNA virus sp. | 564 | Open in IMG/M |
3300017951|Ga0181577_10143012 | All Organisms → Viruses → Predicted Viral | 1632 | Open in IMG/M |
3300020182|Ga0206129_10216573 | All Organisms → Viruses → unclassified viruses → unclassified DNA viruses → unclassified dsDNA viruses → Prokaryotic dsDNA virus sp. | 833 | Open in IMG/M |
3300020347|Ga0211504_1009910 | All Organisms → Viruses → Predicted Viral | 2897 | Open in IMG/M |
3300020439|Ga0211558_10116725 | All Organisms → Viruses → Predicted Viral | 1297 | Open in IMG/M |
3300025057|Ga0208018_101414 | All Organisms → Viruses → Predicted Viral | 4875 | Open in IMG/M |
3300025093|Ga0208794_1003921 | Not Available | 4886 | Open in IMG/M |
3300025425|Ga0208646_1001780 | Not Available | 9788 | Open in IMG/M |
3300025543|Ga0208303_1119708 | Not Available | 532 | Open in IMG/M |
3300027976|Ga0209702_10013765 | Not Available | 7806 | Open in IMG/M |
3300029306|Ga0135212_1031472 | Not Available | 565 | Open in IMG/M |
3300031578|Ga0307376_10092354 | All Organisms → Viruses → Predicted Viral | 2137 | Open in IMG/M |
3300031673|Ga0307377_10376606 | All Organisms → Viruses → unclassified viruses → unclassified DNA viruses → unclassified dsDNA viruses → Prokaryotic dsDNA virus sp. | 1059 | Open in IMG/M |
Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).
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Habitat | Taxonomy | Distribution |
Aqueous | Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous | 18.35% |
Salt Marsh | Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh | 13.76% |
Marine | Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine | 11.93% |
Seawater | Environmental → Aquatic → Marine → Strait → Unclassified → Seawater | 8.26% |
Marine Harbor | Environmental → Aquatic → Marine → Harbor → Unclassified → Marine Harbor | 4.59% |
Soil | Environmental → Terrestrial → Soil → Clay → Unclassified → Soil | 4.59% |
Deep Subsurface | Environmental → Aquatic → Marine → Oceanic → Sediment → Deep Subsurface | 3.67% |
Pelagic Marine | Environmental → Aquatic → Marine → Pelagic → Unclassified → Pelagic Marine | 3.67% |
Saline Lake | Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Lake | 3.67% |
Pond Water | Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Pond Water | 2.75% |
Seawater | Environmental → Aquatic → Marine → Inlet → Unclassified → Seawater | 1.83% |
Seawater | Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater | 1.83% |
Marine | Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine | 1.83% |
Estuarine Water | Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water | 1.83% |
Seawater | Environmental → Aquatic → Marine → Pelagic → Unclassified → Seawater | 1.83% |
Freshwater And Marine | Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Freshwater And Marine | 1.83% |
Marine | Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Marine | 1.83% |
Freshwater | Environmental → Aquatic → Freshwater → Ice → Glacial Lake → Freshwater | 0.92% |
Marine | Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine | 0.92% |
Sackhole Brine | Environmental → Aquatic → Marine → Coastal → Unclassified → Sackhole Brine | 0.92% |
Marine | Environmental → Aquatic → Marine → Coastal → Unclassified → Marine | 0.92% |
Pelagic Marine | Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Pelagic Marine | 0.92% |
Sediment | Environmental → Aquatic → Marine → Sediment → Unclassified → Sediment | 0.92% |
Saline Water | Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Water | 0.92% |
Lake Water | Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Lake Water | 0.92% |
Saline Lake | Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Lake | 0.92% |
Saline | Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline | 0.92% |
Saline Water And Sediment | Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Sediment → Saline Water And Sediment | 0.92% |
Mangrove Sediment | Environmental → Aquatic → Sediment → Unclassified → Unclassified → Mangrove Sediment | 0.92% |
Meromictic Pond | Environmental → Aquatic → Unclassified → Unclassified → Unclassified → Meromictic Pond | 0.92% |
Visualization |
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Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).
Taxon OID | Sample Name | Habitat Type | IMG/M Link |
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3300000116 | Marine microbial communities from Delaware Coast, sample from Delaware MO Spring March 2010 | Environmental | Open in IMG/M |
3300000117 | Marine microbial communities from Delaware Coast, sample from Delaware MO Winter December 2010 | Environmental | Open in IMG/M |
3300000928 | Marine plume microbial communities from the Columbia River - 25 PSU | Environmental | Open in IMG/M |
3300000929 | Marine plume microbial communities from the Columbia River - 15 PSU | Environmental | Open in IMG/M |
3300004369 | Saline microbial communities from the South Caspian sea - cas-15 | Environmental | Open in IMG/M |
3300004457 | Marine viral communities from Newfoundland, Canada MC-1 | Environmental | Open in IMG/M |
3300005239 | Environmental Genome Shotgun Sequencing: Ocean Microbial Populations from the Gulf of Maine | Environmental | Open in IMG/M |
3300005613 | Saline sediment microbial communities from Etoliko Lagoon, Greece - sediment | Environmental | Open in IMG/M |
3300005913 | Saline lake microbial communities from Ace Lake, Antarctica - Antarctic Ace Lake Metagenome 02UK1 | Environmental | Open in IMG/M |
3300005936 | Saline lake microbial communities from Ace Lake, Antarctica - Antarctic Ace Lake Metagenome 02UKS | Environmental | Open in IMG/M |
3300006029 | Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Spr_20_<0.8_DNA | Environmental | Open in IMG/M |
3300006734 | Marine viral communities from the Gulf of Mexico - 31_GoM_OMZ_CsCl metaG | Environmental | Open in IMG/M |
3300006752 | Marine viral communities from the Subarctic Pacific Ocean - 13_ETSP_OMZ_AT15268 metaG | Environmental | Open in IMG/M |
3300006790 | Marine viral communities from the Gulf of Mexico - 32_GoM_OMZ_CsCl metaG | Environmental | Open in IMG/M |
3300006793 | Marine viral communities from the Subarctic Pacific Ocean - 17_ETSP_OMZ_AT15314 metaG | Environmental | Open in IMG/M |
3300006802 | Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Nov_18 | Environmental | Open in IMG/M |
3300006810 | Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Sep_01 | Environmental | Open in IMG/M |
3300006916 | Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Nov_24 | Environmental | Open in IMG/M |
3300006920 | Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Nov_12 | Environmental | Open in IMG/M |
3300006922 | Marine viral communities from the Subarctic Pacific Ocean - 11_ETSP_OMZ_AT15265 metaG | Environmental | Open in IMG/M |
3300007074 | Saline lake microbial communities from Ace Lake, Antarctica - Antarctic Ace Lake Metagenome 02UK8 | Environmental | Open in IMG/M |
3300007540 | Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1504_2 Viral MetaG | Environmental | Open in IMG/M |
3300007640 | Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Aug_28 | Environmental | Open in IMG/M |
3300009001 | Salt pond water microbial communities from South San Francisco under conditions of wetland restoration - Salt Pond MetaG SF2_C_H2O_MG | Environmental | Open in IMG/M |
3300009426 | Pelagic marine microbial communities from North Sea - COGITO_mtgs_100420 | Environmental | Open in IMG/M |
3300009433 | Pelagic marine microbial communities from North Sea - COGITO_mtgs_100330 | Environmental | Open in IMG/M |
3300009435 | Pelagic marine microbial communities from North Sea - COGITO_mtgs_100413 | Environmental | Open in IMG/M |
3300009450 | Aquatic microbial communities from different depth of meromictic Siders Pond, Falmouth, Massachusetts; Cast 1, 4m depth; DNA IDBA-UD | Environmental | Open in IMG/M |
3300009529 | Deep subsurface microbial communities from Black Sea to uncover new lineages of life (NeLLi) - Black_00105 metaG | Environmental | Open in IMG/M |
3300010413 | Mangrove sediment microbial communities from Mai Po Nature Reserve Marshes in Hong Kong, China - Maipo_9 | Environmental | Open in IMG/M |
3300011118 | Deep subsurface microbial communities from Aarhus Bay to uncover new lineages of life (NeLLi) - Aarhus_00045 metaG | Environmental | Open in IMG/M |
3300017708 | Marine viral communities from the Subarctic Pacific Ocean - Lowphox_04 viral metaG | Environmental | Open in IMG/M |
3300017713 | Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 14 SPOT_SRF_2010-08-11 | Environmental | Open in IMG/M |
3300017714 | Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 35 SPOT_SRF_2012-08-15 | Environmental | Open in IMG/M |
3300017735 | Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 54 SPOT_SRF_2014-05-21 | Environmental | Open in IMG/M |
3300017748 | Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 16 SPOT_SRF_2010-10-21 | Environmental | Open in IMG/M |
3300017749 | Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 15 SPOT_SRF_2010-09-15 | Environmental | Open in IMG/M |
3300017776 | Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 17 SPOT_SRF_2010-11-23 | Environmental | Open in IMG/M |
3300017781 | Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 46 SPOT_SRF_2013-08-14 | Environmental | Open in IMG/M |
3300017950 | Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 041413US metaG (megahit assembly) | Environmental | Open in IMG/M |
3300017951 | Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 101413BT metaG (megahit assembly) | Environmental | Open in IMG/M |
3300017967 | Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 071411BT metaG (megahit assembly) | Environmental | Open in IMG/M |
3300017985 | Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 101412BT metaG (megahit assembly) | Environmental | Open in IMG/M |
3300017986 | Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 101405AT metaG (megahit assembly) | Environmental | Open in IMG/M |
3300018041 | Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 041407BS metaG (megahit assembly) | Environmental | Open in IMG/M |
3300018048 | Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 041412US metaG (megahit assembly) | Environmental | Open in IMG/M |
3300018410 | Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 011510BT metaG (megahit assembly) | Environmental | Open in IMG/M |
3300018413 | Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 011509CT metaG (megahit assembly) | Environmental | Open in IMG/M |
3300018420 | Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 011512CT metaG (megahit assembly) | Environmental | Open in IMG/M |
3300018428 | Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 101404AT metaG (megahit assembly) | Environmental | Open in IMG/M |
3300020182 | Pelagic subsurface seawater microbial communities from Kabeltonne, Helgoland, North Sea - Helgoland_Spring_Bloom_20160502_2 | Environmental | Open in IMG/M |
3300020185 | Pelagic subsurface seawater microbial communities from Kabeltonne, Helgoland, North Sea - Helgoland_Spring_Bloom_20160517_1 | Environmental | Open in IMG/M |
3300020191 | Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 041410US metaG (spades assembly) | Environmental | Open in IMG/M |
3300020347 | Marine microbial communities from Tara Oceans - TARA_B100000497 (ERX556109-ERR598994) | Environmental | Open in IMG/M |
3300020439 | Marine microbial communities from Tara Oceans - TARA_B100001939 (ERX556062-ERR599029) | Environmental | Open in IMG/M |
3300021347 | Coastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO266 | Environmental | Open in IMG/M |
3300021375 | Coastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO132 | Environmental | Open in IMG/M |
3300021957 | Estuarine water microbial communities from San Francisco Bay, California, United States - C33_18D | Environmental | Open in IMG/M |
3300021958 | Estuarine water microbial communities from San Francisco Bay, California, United States - C33_27D | Environmental | Open in IMG/M |
3300022183 | Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Nov_24 (v3) | Environmental | Open in IMG/M |
3300022220 | Sediment microbial communities from San Francisco Bay, California, United States - SF_May12_sed_USGS_21 | Environmental | Open in IMG/M |
3300022926 | Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 041412US metaG | Environmental | Open in IMG/M |
3300023251 | Saline water microbial communities from Ace Lake, Antarctica - #1073 | Environmental | Open in IMG/M |
3300024433 | Deep subsurface microbial communities from Black Sea to uncover new lineages of life (NeLLi) - Black_00105 metaG (SPAdes) | Environmental | Open in IMG/M |
3300024519 (restricted) | Seawater microbial communities from Strait of Georgia, British Columbia, Canada - BC1_12_27 | Environmental | Open in IMG/M |
3300025057 | Marine viral communities from the Gulf of Mexico - 31_GoM_OMZ_CsCl metaG (SPAdes) | Environmental | Open in IMG/M |
3300025083 | Marine viral communities from the Subarctic Pacific Ocean - 11_ETSP_OMZ_AT15265 metaG (SPAdes) | Environmental | Open in IMG/M |
3300025093 | Marine viral communities from the Gulf of Mexico - 32_GoM_OMZ_CsCl metaG (SPAdes) | Environmental | Open in IMG/M |
3300025098 | Marine viral communities from the Subarctic Pacific Ocean - 13_ETSP_OMZ_AT15268 metaG (SPAdes) | Environmental | Open in IMG/M |
3300025108 | Marine viral communities from the Subarctic Pacific Ocean - 17_ETSP_OMZ_AT15314 metaG (SPAdes) | Environmental | Open in IMG/M |
3300025425 | Saline lake microbial communities from Ace Lake, Antarctica - Antarctic Ace Lake Metagenome 02UK8 (SPAdes) | Environmental | Open in IMG/M |
3300025543 | Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1504_2 Viral MetaG (SPAdes) | Environmental | Open in IMG/M |
3300025601 | Saline lake microbial communities from Ace Lake, Antarctica - Antarctic Ace Lake Metagenome 02UK1 (SPAdes) | Environmental | Open in IMG/M |
3300025603 | Saline lake microbial communities from Ace Lake, Antarctica - Antarctic Ace Lake Metagenome 02UKE (SPAdes) | Environmental | Open in IMG/M |
3300025632 | Pelagic marine microbial communities from North Sea - COGITO_mtgs_100413 (SPAdes) | Environmental | Open in IMG/M |
3300025671 | Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Mar_4 (SPAdes) | Environmental | Open in IMG/M |
3300025759 | Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Nov_24 (SPAdes) | Environmental | Open in IMG/M |
3300025853 | Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Sep_01 (SPAdes) | Environmental | Open in IMG/M |
3300025889 | Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Nov_18 (SPAdes) | Environmental | Open in IMG/M |
3300025892 | Pelagic Microbial community sample from North Sea - COGITO 998_met_01 (SPAdes) | Environmental | Open in IMG/M |
3300027861 (restricted) | Seawater microbial communities from Saanich Inlet, British Columbia, Canada - Na_anoxic_12_MG | Environmental | Open in IMG/M |
3300027976 | Freshwater microbial communities from Lake Fryxell liftoff mats and glacier meltwater in Antarctica - FRY-01 (SPAdes) | Environmental | Open in IMG/M |
3300028045 (restricted) | Seawater microbial communities from Saanich Inlet, British Columbia, Canada - Na_anoxic_10_MG | Environmental | Open in IMG/M |
3300029293 | Marine harbor viral communities from the Indian Ocean - SCH2 | Environmental | Open in IMG/M |
3300029302 | Marine harbor viral communities from the Indian Ocean - SRB3 | Environmental | Open in IMG/M |
3300029306 | Marine harbor viral communities from the Indian Ocean - SCH3 | Environmental | Open in IMG/M |
3300029308 | Marine harbor viral communities from the Indian Ocean - SRB2 | Environmental | Open in IMG/M |
3300029345 | Marine harbor viral communities from the Indian Ocean - SCH1 | Environmental | Open in IMG/M |
3300031519 | Sea-ice brine microbial communities from Beaufort Sea near Barrow, Alaska, United States - SB 0.2 | Environmental | Open in IMG/M |
3300031565 | Soil microbial communities from Risofladan, Vaasa, Finland - UN-2 | Environmental | Open in IMG/M |
3300031578 | Soil microbial communities from Risofladan, Vaasa, Finland - TR-2 | Environmental | Open in IMG/M |
3300031669 | Soil microbial communities from Risofladan, Vaasa, Finland - TR-1 | Environmental | Open in IMG/M |
3300031673 | Soil microbial communities from Risofladan, Vaasa, Finland - TR-3 | Environmental | Open in IMG/M |
3300034375 | Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Aug_30 (v4) | Environmental | Open in IMG/M |
Geographical Distribution | |
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Note: Some of these sequences are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).
Protein ID | Sample Taxon ID | Habitat | Sequence |
DelMOSpr2010_100016554 | 3300000116 | Marine | MDLEGKVSFISGFTLTSLWTMPLMEFTMAFFLGLIGGLGGLVGKLIFKKVEKWKNK* |
DelMOWin2010_100470105 | 3300000117 | Marine | MNMDNKISFLSGFTLTSIWTMTLYEIGLAFLLGLVGGIGGLVGRWIIKKLGWFGQK* |
OpTDRAFT_1004802912 | 3300000928 | Freshwater And Marine | MSMEHKLSFFSGFALTSLWTMPLMEFTMAFFLGLVGGLGGLVGRLIFNKIEKWMNK* |
NpDRAFT_1003774412 | 3300000929 | Freshwater And Marine | MDIQGKISFISGFTLTSLWTMPLMEFTMAFLLGLVGGIGGLVGKLIFNKIDKWKNK* |
Ga0065726_1702610 | 3300004369 | Saline | MDLDNKISFISGFTLTSIWTLTLYELTMALILGVVGGFGGMFGKWLFKKLGWFGQSNK* |
Ga0066224_12716442 | 3300004457 | Marine | YKIKKQIKIKYMQLIQQKISFICGFLLTSLWTMPLMEIGMAFLLGLVGGVGGLVGRLIFNKIDKWKNG* |
Ga0073579_13753603 | 3300005239 | Marine | MNIDSKISFISGFSLTTLWTMPLYELSMAFLLGLIGGVGGLVGKWLMKKLGWFNK* |
Ga0074649_12482782 | 3300005613 | Saline Water And Sediment | MDNKISFFSGFTITSLWTMTLYEIGLAFFLGLVGGLGGLFGKWIIRKLGWFGQDKK* |
Ga0075108_100026352 | 3300005913 | Saline Lake | MSNIDNKISFISGFALTSTWTMPLYNLGMALLLGIVGGFGGLVGRWVYKKIWPDV* |
Ga0075124_101714491 | 3300005936 | Lake Water | ISGFALTSTWTMPLYNLGMALLLGIVGGFGGLVGRWVYKKIWPDV* |
Ga0075466_10525012 | 3300006029 | Aqueous | VKLTQQNKMNMDNKISFLSGFTLTSIWTMTLYEIGLAFLLGLVGGIGGLVGRWIIKKLGWFGQK* |
Ga0075466_11342102 | 3300006029 | Aqueous | MTIDSKISFFSGFTLTSLWTMPLMEVGMAFLLGLVGGIGGLVGKWLINKSGWFKDTKK* |
Ga0098073_100014526 | 3300006734 | Marine | MNMDNKISFISGFTLTSIWTMTLYEIGLAFLLGIVGGIGGLVGRWIIKKLGWFGQK* |
Ga0098048_10417363 | 3300006752 | Marine | MHMEQKISFFSGFALTSLWTMPLMEFTMAFLLGLVGGLGGLVGRLIFNKVEKWMNK* |
Ga0098074_11916152 | 3300006790 | Marine | MDNKISFFSGFTLTSIWTMPLYEMSMALLLGIIGGFGGMIGKWVWNKINKK* |
Ga0098055_10180003 | 3300006793 | Marine | MNNMDNKISWISGFTLTSIWTMPLFEMGMALLLGIIGGFGGMIGKWAWNKINKK* |
Ga0098055_10766964 | 3300006793 | Marine | MNIDSKISFFSGFTLTSLWTMPLMEVGMAFILGLVGGIGGLLGKWLMQKSGWFKDTKK* |
Ga0098055_12397072 | 3300006793 | Marine | MNMEHKISFFSGFALTSLWTMPLMEFTMAFLLGLVGGLGGLVGRLIFNKVEKWMNK* |
Ga0070749_100047569 | 3300006802 | Aqueous | MEQKISFISGFALTSLWTMPLYEMGMALVLGIIGGFGGLVGRWIFKIFESKWKK* |
Ga0070749_100198373 | 3300006802 | Aqueous | MDLDNRISFLSGFTVTSLWTMTLYELGLAFLLGLVGGIGGLVGKWIIKKSGWFGQENK* |
Ga0070754_1000320517 | 3300006810 | Aqueous | MEQKISFISGFALTSLWTMPLYEMGMALVLGIIGGFGGLVGRWIFKILESKWKK* |
Ga0070754_100107814 | 3300006810 | Aqueous | MEQKISFISGFTLTSIWTMPLYDMGMALILGIIGGFGGLVGRAIFKKIEQWKNK* |
Ga0070754_101370442 | 3300006810 | Aqueous | MDMEQKISFFSGFALTSLWTMPLMEFTMAFFLGLIGGLGGLVGRLIWNKIERWKK* |
Ga0070750_103506992 | 3300006916 | Aqueous | MNNMDNRLSFFSGFTLTSLWTMPLYEVGMAFLLGLVGGIGGLVGKWIWNKINKK* |
Ga0070748_10766884 | 3300006920 | Aqueous | MTIDSKISFFSGFTLTSLWTMPLMEVGMAFLLGLVGGMGGLVGKWLINKSGWFKNTKK* |
Ga0098045_10303514 | 3300006922 | Marine | MHMEQKISFFSGFALTSLWTMPLMEFTMAFLLGLVGGLGGLVGRLIFNKVEKWM |
Ga0075110_10352742 | 3300007074 | Saline Lake | MSNIDNKISFISGFALTSTWTMPLYNLGMALLLGIVGGFGGLVGRW |
Ga0099847_100159411 | 3300007540 | Aqueous | MTNLDNKISFISGFGLTSLWAMPIMELAMALLLGLVGGIGGVLGKWIIYKLGWFKRDV* |
Ga0099847_11738763 | 3300007540 | Aqueous | FSLTTLWTMPLYELSMAFLLGLIGGVGGLVGKWLMKKLGWFNK* |
Ga0070751_13193821 | 3300007640 | Aqueous | KISFISGFSLTTLWTMPIYELSMALLLGLVGGIGGVLGKWIIYKTGWFNKK* |
Ga0102963_10414393 | 3300009001 | Pond Water | MEQKISFISGFTLTSIWTMPLYDMGMALILGIIGGFGGLVGRAIFKKIE |
Ga0102963_10662773 | 3300009001 | Pond Water | MEQKISFISGFTLTSLWTMPLYDMGMALILGIIGGFGGLVGRAIFKKIEQ |
Ga0102963_10725184 | 3300009001 | Pond Water | MNMDNKISFFSGFTLTSLWTMTLYEIGLAFFLGIVGGIGGLVGRWIIKKLGWFGQK* |
Ga0115547_11036593 | 3300009426 | Pelagic Marine | MTIDSKISFFSGFTLTSLWTMPLMEVGMAFLLGLVGGIGGLFGKWLIKKLGWFGQK* |
Ga0115545_10160033 | 3300009433 | Pelagic Marine | MTIDSKISFFSGFTLTSLWTMPLMELGMAFLLGLVGGLGGLFGKWLIKKLGWLGQK* |
Ga0115546_10555832 | 3300009435 | Pelagic Marine | MTIDSKISFFSGFTLTSLWTMPLMEVGMAFLLGLVGGIGGLVGKWIIKKLGWFGQK* |
Ga0127391_10299542 | 3300009450 | Meromictic Pond | MGLDNKISFLSGFILTSIWTMTLYELTMALFLGIVGGMGGIIGKWIIRKFGWFGQNQDRRVK* |
Ga0114919_102194564 | 3300009529 | Deep Subsurface | MIKMDLDNKISFISGFTLTSLWTMPIMELGMAFLLGLVGGLGGLFGKWISKKCGWFGDNKG* |
Ga0114919_102256222 | 3300009529 | Deep Subsurface | VNKKMDLDNKISFISGFTLTSIWTMTLYELTMALFLGIIGGIGGMFGKWLFKKLGWFGQSDK* |
Ga0136851_122834811 | 3300010413 | Mangrove Sediment | MDLDNKISFISGFTLTSIWTMTLYELTMALFLGIIGGIGGIVGKWIIRKLGWFGQDKK* |
Ga0114922_100885914 | 3300011118 | Deep Subsurface | MHMEQKISFFSGFALTSLWTMPIMEFTMAFFLGLIGGLGGLVGRLIWNKIERWKK* |
Ga0181369_10059633 | 3300017708 | Marine | MNYMEQKISFFSGFALTSLWTMPLMEFTMAFLLGLVGGLGGLVGRLIFNKVEKWMNK |
Ga0181391_10009912 | 3300017713 | Seawater | MEQKISFFSGFALTSLWTMPLYELSMAFLLGLVGGLGGLVGRLIFNKVDKWMNK |
Ga0181412_10008789 | 3300017714 | Seawater | MYMEQKISFISGFTLTSLWTMPLMEFTMAFFLGLVGGIGGLLGRFIMNKTGWFDKKDE |
Ga0181412_10041392 | 3300017714 | Seawater | MNYMEQKISFFSGFALTSLWTMPLYELSMAFLLGLVGGLGGLVGRLIFNKVDKWMNK |
Ga0181431_10114602 | 3300017735 | Seawater | MNNMDNRLSFFSGFTLTSIWTMPLYEMSMAFLLGLVGGLGGLVGKWIWNKINKK |
Ga0181393_10064173 | 3300017748 | Seawater | MNYMEQKISFFSGFALTSLWTMPLYELSMAFLLGLVGGLGGLVGRLIFKKIEEWKNK |
Ga0181392_100008830 | 3300017749 | Seawater | MNNMDNKISWISGFTLTSIWTMPLFEMGMALLLGIIGGFGGMIGKWVWNKINKK |
Ga0181394_11525611 | 3300017776 | Seawater | SFFSGFTLTSLWTMPLMEIGMAFVLGLVGGLGGLVGKWLMNKTGWFNKKDE |
Ga0181423_10017023 | 3300017781 | Seawater | MNNMDNKISFFSGFTLTSIWTMPLYEMSMAFLLGLVGGLGGLVGKWIWNKINKK |
Ga0181607_102753412 | 3300017950 | Salt Marsh | MEQKISFISGFALTSLWTMPLYDMGMALILGIIGGFGGLVGRAIFKKIEEWKNK |
Ga0181607_106247052 | 3300017950 | Salt Marsh | MEQKISFISGFTLTTLWTMPLYEMGMALILGIIGGFGGLVGRAIYK |
Ga0181577_101430124 | 3300017951 | Salt Marsh | MNNMDNKISFISGFTLTSIWTMTLYEIGLAFFLGIVGGIGGLVGRWIIKKLGWFGQK |
Ga0181590_109225122 | 3300017967 | Salt Marsh | MTNLDNKISFISGFTITSLWTMTLYEIGLAFFLGLVGGLGGLVGKWLVKKSGWFGKE |
Ga0181590_110917702 | 3300017967 | Salt Marsh | MGNLDNKISFASGFFLTSTWTLPLMEIGMALLLGIVGGFSGMFGKWLFTRIGWFKNTKK |
Ga0181576_105991121 | 3300017985 | Salt Marsh | ISFISGFTLTSIWTLTLYELTMALILGVVGGFGGMFGKWLFKKLGWFGNNKG |
Ga0181569_111096222 | 3300017986 | Salt Marsh | MNNMDNKISFISGFTLTSIWTMTLYEIGLAFFLGLVGGIGGLVGRWIIKKLGWFGQK |
Ga0181601_102224052 | 3300018041 | Salt Marsh | MEQKISFISGFTLTSLWTMPLYDMGMALILGIIGGFGGLVGRWIFKKLEQWKNK |
Ga0181606_106844662 | 3300018048 | Salt Marsh | MEQKISFISGFTLTSLWTMPLYDMGMALILGIIGGFGGLVGRAIFKKIEQWKNK |
Ga0181561_103616912 | 3300018410 | Salt Marsh | MQNNIMNLDNKISFISGFGLTSLWAMPIVELSMALLLGLVGGIGGVVGKWIIYKLGWFKRDV |
Ga0181560_102597192 | 3300018413 | Salt Marsh | MGLDNKISFISGFTLTSLWTMPLYELGMALALGIIGGLGGVFGKWIGYKL |
Ga0181563_100632293 | 3300018420 | Salt Marsh | MNLDNKISFISGFGLTSLWAMPIVELSMALLLGLVGGIGGVVGKWIIYKLGWFKRDV |
Ga0181568_109490182 | 3300018428 | Salt Marsh | MNMDNKISFLSGFTLTSIWTMTLYEIGLAFLLGLVGGIGGLVGRWIIKKLG |
Ga0206129_102165731 | 3300020182 | Seawater | SFFSGFTLTSLWTMPLMEVGMAFLLGLVGGIGGLVGKWLINKSGWFKNKKK |
Ga0206131_102622114 | 3300020185 | Seawater | MTIDSKISFFSGFTLTSLWTMPLMEVGMAFLLGLVGGIGGLVGKWLINKSGWFKNKKK |
Ga0181604_103020342 | 3300020191 | Salt Marsh | MEQKISFISGFALTSLWTMPLYDMGMALILGIIGGFGGLVGRFIFKKLEQWKNK |
Ga0211504_10099102 | 3300020347 | Marine | MNIDSKISFFSGFTLTSLWTMPLMEVGMAFLLGLVGGLGGLVGKWIMKKLGWFGQSNK |
Ga0211558_101167252 | 3300020439 | Marine | VIHTQQNKMNMDNKISFISGFTLTSIWTMTLYEIGLAFLLGIVGGIGGLVGKWIIKKLGWFGQK |
Ga0213862_103370391 | 3300021347 | Seawater | MNMDNKISFLSGFTLTSIWTMTLYEIGLAFLLGLVGGIGGLVGRWIIKKLGWFGQK |
Ga0213869_100006293 | 3300021375 | Seawater | MNIDSKISFISGFSLTTLWTMPLYELSMAFLLGLIGGVGGLVGKWLMKKLGWFNK |
Ga0222717_102674472 | 3300021957 | Estuarine Water | MNIDSKISFFSGFTLTSLWTMPLMEVGMAFLLGLVGGIGGLVGKWLMNKSGWFKEKKK |
Ga0222718_100064407 | 3300021958 | Estuarine Water | VKLTQQNKMNMDNKISFFSGFTLTSIWTMTLYEIGLAFLLGLVGGIGGLVGRWIIKKLGWFGQK |
Ga0196891_10089075 | 3300022183 | Aqueous | VKLTQQNKMNMDNKISFLSGFTLTSIWTMTLYEIGLAFLLGLVGGIGGLVGRWIIKKLGWFGQK |
Ga0224513_102418181 | 3300022220 | Sediment | MNIDSKISFFSGFTLTSLWTMPLMEVGMAFLLGLVGGIGGLVGKWIMKKLGWFGQSNK |
Ga0255753_13742471 | 3300022926 | Salt Marsh | MEQKISFISGFALTSLWTMPLYDMGMALILGIIGGFGGLVGRWIFKKLEQWKNK |
Ga0222683_10418212 | 3300023251 | Saline Water | MSNIDNKISFISGFALTSTWTMPLYNLGMALLLGIVGGFGGLVGRWIYKKIWPNV |
Ga0209986_104260882 | 3300024433 | Deep Subsurface | MNLDNKISFISGFTITSLWTMPIMEIGMAFLLGLVGGLGGLFGKWISKKCGWFGQDKK |
(restricted) Ga0255046_106409572 | 3300024519 | Seawater | MYNLDNKISFISGFTLTSLWTMPLYELSMALLLGLVGGIGGVLGKWITYKLGLFRKDDK |
Ga0208018_1014143 | 3300025057 | Marine | MNMDNKISFISGFTLTSIWTMTLYEIGLAFLLGIVGGIGGLVGRWIIKKLGWFGQK |
Ga0208791_10448892 | 3300025083 | Marine | MNNMDNKISWISGFTLTSIWTMPLFEMGMALLLGIIGGFGGMIGKWAWNKINKK |
Ga0208794_100392113 | 3300025093 | Marine | MDNKISFLSGFTLTSIWTMTLYEIGLAFFLGIVGGIGGLVGRWIIKKLGWFGQK |
Ga0208434_10731441 | 3300025098 | Marine | EHKISFFSGFALTSLWTMPLMEFTMAFLLGLVGGLGGLVGRLIFNKVEKWMNK |
Ga0208793_11733131 | 3300025108 | Marine | MNNMDNKISWISGFTLTSIWTMPLFEMGMALLLGIIGGFGGMIGKWAWNK |
Ga0208646_100178010 | 3300025425 | Saline Lake | MSNIDNKISFISGFALTSTWTMPLYNLGMALLLGIVGGFGGLVGRWVYKKIWPDV |
Ga0208303_11197081 | 3300025543 | Aqueous | GFALTSIWAMPIMELAMALLLGLVGGIGGVVGKWIIYKTGWFRRDA |
Ga0208768_10026692 | 3300025601 | Saline Lake | MGNIDNKISFISGFALTSTWTMPLYNLGMALLLGIVGGFGGLVGRWIYKKIWPNV |
Ga0208414_10662412 | 3300025603 | Saline Lake | MSNIDNKISFISGFALTSTWTMPLYNLGMALLLGIVGGFGGLVGRWIYKKIWP |
Ga0209194_10746582 | 3300025632 | Pelagic Marine | MTIDSKISFFSGFTLTSLWTMPLMEVGMAFLLGLVGGIGGLVGKWIIKKLGWFGQK |
Ga0208898_10098164 | 3300025671 | Aqueous | MEQKISFISGFTLTSIWTMPLYDMGMALILGIIGGFGGLVGRAIFKKIEQWKNK |
Ga0208899_11343623 | 3300025759 | Aqueous | MEQKISFISGFALTSLWTMPLYEMGMALVLGIIGGFGGLVGRWIFKILESKWKK |
Ga0208645_100509024 | 3300025853 | Aqueous | MDNKISFLSGFTLTSIWTMTLYEIGLAFLLGLVGGIGGLVGRWIIKKLGWFGQK |
Ga0208645_10618653 | 3300025853 | Aqueous | MEQKISFISGFALTSLWTMPLYEMGMALVLGIIGGFGGLVGRWIFKIFESKWKK |
Ga0208644_11476383 | 3300025889 | Aqueous | MDLDNKISFFSGFTLTSLWTMPLYDITMALVLGIVGGFGGMFGKFIYSKITGKK |
Ga0209630_103886942 | 3300025892 | Pelagic Marine | MTIDSKISFFSGFTLTSLWTMPLMELGMAFLLGLVGGLGGLFGKWLIKKLGWLGQK |
(restricted) Ga0233415_106382582 | 3300027861 | Seawater | MYIMENKVSFISGFVLTSLWTMPLMEISMAFVLGLVGGLGGLVGRVIFKKLEKWLNKE |
Ga0209702_1001376510 | 3300027976 | Freshwater | MSNIDNKISFISGFALTSTWTLPLYNIGMALLLGIVGGFGGLVGRWVYKKIWPNV |
(restricted) Ga0233414_105622622 | 3300028045 | Seawater | MNIDNKISFFSGFTLTSLWTMPLMEIGMAFVLGLVGGLGGLVGKWLMNKTGWFNKKDE |
Ga0135211_10501282 | 3300029293 | Marine Harbor | MNNMDNKISFFSGFTITSLWTMPIMEIGMAFLLGIVGGIGGLVGKWIIKKLGWFGQK |
Ga0135227_10020902 | 3300029302 | Marine Harbor | MNNMDNRISFFSGFTLTSIYTMPLYEITMALFLGIVGGFGGMLGKWIWNKINKNGK |
Ga0135212_10314722 | 3300029306 | Marine Harbor | MTNLDNKISFISGFTITSLWTMTLYEIGLAFLLGLVGGIGGLVGKWLMKKSGWFGKE |
Ga0135226_10376192 | 3300029308 | Marine Harbor | MNMDNKISFISGFTLTSIWTMTLYEIGLAFLLGLVGGIGGLVGRWIIKKLGWFGQK |
Ga0135210_10322802 | 3300029345 | Marine Harbor | MTNLDNKISFISGFTITSLWTMTLYEIGLAFFLGLVGGIGGLVGKWIMKKLGWFGKE |
Ga0307488_100522411 | 3300031519 | Sackhole Brine | MQLIQQKISFICGFLLTSLWTMPLMEIGMAFVLGLVGGVGGLVGRLIFNKIDKWKNG |
Ga0307379_110693232 | 3300031565 | Soil | MHIMENKVSFISGFVLTSLWTMPLYEISMAFVLGLVGGLGGLVGRVIFKKIEKWMKKD |
Ga0307376_100923543 | 3300031578 | Soil | MEQKISFISGFTLTTIWTMPLYEISMAFVLGLVGGLGGLVGRVIFKKIEKWLNKE |
Ga0307375_105689912 | 3300031669 | Soil | MGLDNKISFISGFTLTSLWTMPLYDVSMALLLGLIGGIGGVIGKWLINKTPWFKKDV |
Ga0307377_103766063 | 3300031673 | Soil | MEQKISFISGFTLTTIWTMPLYEISMAFVLGLVGGLGGLVGRVIFKKIEKWMKKD |
Ga0307377_105927723 | 3300031673 | Soil | KVSFISGFVLTSLWTMPLYEISMAFVLGLVGGLGGLVGRVIFKKIEKWLNKE |
Ga0348336_045684_3_158 | 3300034375 | Aqueous | MEQKISFISGFALTSLWTMPLYEMGMALVLGIIGGFGGLVGRWIFKILESKW |
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