NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Metagenome Family F088749

Metagenome Family F088749

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
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Overview

Basic Information
Family ID F088749
Family Type Metagenome
Number of Sequences 109
Average Sequence Length 55 residues
Representative Sequence MNMDNKISFISGFTLTSIWTMTLYEIGLAFLLGLVGGIGGLVGRWIIKKLGWFGQK
Number of Associated Samples 94
Number of Associated Scaffolds 109

Quality Assessment
Transcriptomic Evidence No
Most common taxonomic group Unclassified
% of genes with valid RBS motifs 18.75 %
% of genes near scaffold ends (potentially truncated) 4.59 %
% of genes from short scaffolds (< 2000 bps) 15.60 %
Associated GOLD sequencing projects 79
AlphaFold2 3D model prediction Yes
3D model pTM-score0.50

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
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Most Common Taxonomy
Group Unclassified (77.064 % of family members)
NCBI Taxonomy ID N/A
Taxonomy N/A

Most Common Ecosystem
GOLD Ecosystem Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous
(18.349 % of family members)
Environment Ontology (ENVO) Unclassified
(56.881 % of family members)
Earth Microbiome Project Ontology (EMPO) Free-living → Saline → Water (saline)
(74.312 % of family members)



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Multiple Sequence Alignments

Select alignment to view:      


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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Transmembrane (alpha-helical) Signal Peptide: No Secondary Structure distribution: α-helix: 55.95%    β-sheet: 0.00%    Coil/Unstructured: 44.05%
Feature Viewer
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Predicted 3D Structure

Structure Viewer
Per-residue confidence (pLDDT):
  0-50   51-70   71-90   91-100  
pTM-score: 0.50
Powered by PDBe Molstar

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.


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Gene Neighborhood

Neighboring Pfam domains

Pfam IDName % Frequency in 109 Family Scaffolds
PF12518DUF3721 28.44
PF14550Peptidase_S78_2 13.76
PF01165Ribosomal_S21 2.75
PF03237Terminase_6N 2.75
PF13392HNH_3 1.83
PF11397GlcNAc 1.83
PF05050Methyltransf_21 0.92
PF136402OG-FeII_Oxy_3 0.92
PF00856SET 0.92
PF07638Sigma70_ECF 0.92
PF04466Terminase_3 0.92

Neighboring Clusters of Orthologous Genes (COGs)

COG IDNameFunctional Category % Frequency in 109 Family Scaffolds
COG0828Ribosomal protein S21Translation, ribosomal structure and biogenesis [J] 2.75
COG1595DNA-directed RNA polymerase specialized sigma subunit, sigma24 familyTranscription [K] 0.92
COG1783Phage terminase large subunitMobilome: prophages, transposons [X] 0.92


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Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:
NameRankTaxonomyDistribution
UnclassifiedrootN/A77.06 %
All OrganismsrootAll Organisms22.94 %

Visualization
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Associated Scaffolds


ScaffoldTaxonomyLengthIMG/M Link
3300000116|DelMOSpr2010_c10001655All Organisms → Viruses → unclassified viruses → unclassified DNA viruses → unclassified dsDNA viruses → Prokaryotic dsDNA virus sp.13405Open in IMG/M
3300000117|DelMOWin2010_c10047010All Organisms → Viruses → Predicted Viral1938Open in IMG/M
3300000929|NpDRAFT_10037744All Organisms → Viruses → unclassified viruses → unclassified DNA viruses → unclassified dsDNA viruses → Prokaryotic dsDNA virus sp.15481Open in IMG/M
3300004369|Ga0065726_17026All Organisms → Viruses11961Open in IMG/M
3300005913|Ga0075108_10002635Not Available7920Open in IMG/M
3300005936|Ga0075124_10171449All Organisms → Viruses → unclassified viruses → unclassified DNA viruses → unclassified dsDNA viruses → Prokaryotic dsDNA virus sp.805Open in IMG/M
3300006734|Ga0098073_1000145All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage27270Open in IMG/M
3300006752|Ga0098048_1041736All Organisms → Viruses → Predicted Viral1462Open in IMG/M
3300006793|Ga0098055_1076696All Organisms → Viruses → Predicted Viral1318Open in IMG/M
3300006793|Ga0098055_1239707All Organisms → Viruses → unclassified viruses → unclassified DNA viruses → unclassified dsDNA viruses → Prokaryotic dsDNA virus sp.683Open in IMG/M
3300006802|Ga0070749_10004756All Organisms → Viruses → unclassified viruses → unclassified DNA viruses → unclassified dsDNA viruses → Prokaryotic dsDNA virus sp.9001Open in IMG/M
3300006802|Ga0070749_10019837Not Available4267Open in IMG/M
3300006810|Ga0070754_10003205All Organisms → Viruses → unclassified viruses → unclassified DNA viruses → unclassified dsDNA viruses → Prokaryotic dsDNA virus sp.11641Open in IMG/M
3300006810|Ga0070754_10137044All Organisms → Viruses → Predicted Viral1180Open in IMG/M
3300006920|Ga0070748_1076688All Organisms → Viruses → Predicted Viral1295Open in IMG/M
3300009001|Ga0102963_1066277All Organisms → Viruses → Predicted Viral1485Open in IMG/M
3300009426|Ga0115547_1103659All Organisms → Viruses → unclassified viruses → unclassified DNA viruses → unclassified dsDNA viruses → Prokaryotic dsDNA virus sp.936Open in IMG/M
3300009529|Ga0114919_10225622All Organisms → Viruses → Predicted Viral1330Open in IMG/M
3300011118|Ga0114922_10088591All Organisms → Viruses → Predicted Viral2660Open in IMG/M
3300017950|Ga0181607_10624705All Organisms → Viruses → unclassified viruses → unclassified DNA viruses → unclassified dsDNA viruses → Prokaryotic dsDNA virus sp.564Open in IMG/M
3300017951|Ga0181577_10143012All Organisms → Viruses → Predicted Viral1632Open in IMG/M
3300020182|Ga0206129_10216573All Organisms → Viruses → unclassified viruses → unclassified DNA viruses → unclassified dsDNA viruses → Prokaryotic dsDNA virus sp.833Open in IMG/M
3300020347|Ga0211504_1009910All Organisms → Viruses → Predicted Viral2897Open in IMG/M
3300020439|Ga0211558_10116725All Organisms → Viruses → Predicted Viral1297Open in IMG/M
3300025057|Ga0208018_101414All Organisms → Viruses → Predicted Viral4875Open in IMG/M
3300025093|Ga0208794_1003921Not Available4886Open in IMG/M
3300025425|Ga0208646_1001780Not Available9788Open in IMG/M
3300025543|Ga0208303_1119708Not Available532Open in IMG/M
3300027976|Ga0209702_10013765Not Available7806Open in IMG/M
3300029306|Ga0135212_1031472Not Available565Open in IMG/M
3300031578|Ga0307376_10092354All Organisms → Viruses → Predicted Viral2137Open in IMG/M
3300031673|Ga0307377_10376606All Organisms → Viruses → unclassified viruses → unclassified DNA viruses → unclassified dsDNA viruses → Prokaryotic dsDNA virus sp.1059Open in IMG/M

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).



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Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:
HabitatTaxonomyDistribution
AqueousEnvironmental → Aquatic → Marine → Coastal → Unclassified → Aqueous18.35%
Salt MarshEnvironmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh13.76%
MarineEnvironmental → Aquatic → Marine → Oceanic → Unclassified → Marine11.93%
SeawaterEnvironmental → Aquatic → Marine → Strait → Unclassified → Seawater8.26%
Marine HarborEnvironmental → Aquatic → Marine → Harbor → Unclassified → Marine Harbor4.59%
SoilEnvironmental → Terrestrial → Soil → Clay → Unclassified → Soil4.59%
Deep SubsurfaceEnvironmental → Aquatic → Marine → Oceanic → Sediment → Deep Subsurface3.67%
Pelagic MarineEnvironmental → Aquatic → Marine → Pelagic → Unclassified → Pelagic Marine3.67%
Saline LakeEnvironmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Lake3.67%
Pond WaterEnvironmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Pond Water2.75%
SeawaterEnvironmental → Aquatic → Marine → Inlet → Unclassified → Seawater1.83%
SeawaterEnvironmental → Aquatic → Marine → Coastal → Unclassified → Seawater1.83%
MarineEnvironmental → Aquatic → Marine → Unclassified → Unclassified → Marine1.83%
Estuarine WaterEnvironmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water1.83%
SeawaterEnvironmental → Aquatic → Marine → Pelagic → Unclassified → Seawater1.83%
Freshwater And MarineEnvironmental → Aquatic → Marine → Neritic Zone → Unclassified → Freshwater And Marine1.83%
MarineEnvironmental → Aquatic → Marine → Neritic Zone → Unclassified → Marine1.83%
FreshwaterEnvironmental → Aquatic → Freshwater → Ice → Glacial Lake → Freshwater0.92%
MarineEnvironmental → Aquatic → Marine → Oceanic → Unclassified → Marine0.92%
Sackhole BrineEnvironmental → Aquatic → Marine → Coastal → Unclassified → Sackhole Brine0.92%
MarineEnvironmental → Aquatic → Marine → Coastal → Unclassified → Marine0.92%
Pelagic MarineEnvironmental → Aquatic → Marine → Neritic Zone → Unclassified → Pelagic Marine0.92%
SedimentEnvironmental → Aquatic → Marine → Sediment → Unclassified → Sediment0.92%
Saline WaterEnvironmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Water0.92%
Lake WaterEnvironmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Lake Water0.92%
Saline LakeEnvironmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Lake0.92%
SalineEnvironmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline0.92%
Saline Water And SedimentEnvironmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Sediment → Saline Water And Sediment0.92%
Mangrove SedimentEnvironmental → Aquatic → Sediment → Unclassified → Unclassified → Mangrove Sediment0.92%
Meromictic PondEnvironmental → Aquatic → Unclassified → Unclassified → Unclassified → Meromictic Pond0.92%

Visualization
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Associated Samples

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Taxon OIDSample NameHabitat TypeIMG/M Link
3300000116Marine microbial communities from Delaware Coast, sample from Delaware MO Spring March 2010EnvironmentalOpen in IMG/M
3300000117Marine microbial communities from Delaware Coast, sample from Delaware MO Winter December 2010EnvironmentalOpen in IMG/M
3300000928Marine plume microbial communities from the Columbia River - 25 PSUEnvironmentalOpen in IMG/M
3300000929Marine plume microbial communities from the Columbia River - 15 PSUEnvironmentalOpen in IMG/M
3300004369Saline microbial communities from the South Caspian sea - cas-15EnvironmentalOpen in IMG/M
3300004457Marine viral communities from Newfoundland, Canada MC-1EnvironmentalOpen in IMG/M
3300005239Environmental Genome Shotgun Sequencing: Ocean Microbial Populations from the Gulf of MaineEnvironmentalOpen in IMG/M
3300005613Saline sediment microbial communities from Etoliko Lagoon, Greece - sedimentEnvironmentalOpen in IMG/M
3300005913Saline lake microbial communities from Ace Lake, Antarctica - Antarctic Ace Lake Metagenome 02UK1EnvironmentalOpen in IMG/M
3300005936Saline lake microbial communities from Ace Lake, Antarctica - Antarctic Ace Lake Metagenome 02UKSEnvironmentalOpen in IMG/M
3300006029Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Spr_20_<0.8_DNAEnvironmentalOpen in IMG/M
3300006734Marine viral communities from the Gulf of Mexico - 31_GoM_OMZ_CsCl metaGEnvironmentalOpen in IMG/M
3300006752Marine viral communities from the Subarctic Pacific Ocean - 13_ETSP_OMZ_AT15268 metaGEnvironmentalOpen in IMG/M
3300006790Marine viral communities from the Gulf of Mexico - 32_GoM_OMZ_CsCl metaGEnvironmentalOpen in IMG/M
3300006793Marine viral communities from the Subarctic Pacific Ocean - 17_ETSP_OMZ_AT15314 metaGEnvironmentalOpen in IMG/M
3300006802Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Nov_18EnvironmentalOpen in IMG/M
3300006810Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Sep_01EnvironmentalOpen in IMG/M
3300006916Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Nov_24EnvironmentalOpen in IMG/M
3300006920Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Nov_12EnvironmentalOpen in IMG/M
3300006922Marine viral communities from the Subarctic Pacific Ocean - 11_ETSP_OMZ_AT15265 metaGEnvironmentalOpen in IMG/M
3300007074Saline lake microbial communities from Ace Lake, Antarctica - Antarctic Ace Lake Metagenome 02UK8EnvironmentalOpen in IMG/M
3300007540Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1504_2 Viral MetaGEnvironmentalOpen in IMG/M
3300007640Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Aug_28EnvironmentalOpen in IMG/M
3300009001Salt pond water microbial communities from South San Francisco under conditions of wetland restoration - Salt Pond MetaG SF2_C_H2O_MGEnvironmentalOpen in IMG/M
3300009426Pelagic marine microbial communities from North Sea - COGITO_mtgs_100420EnvironmentalOpen in IMG/M
3300009433Pelagic marine microbial communities from North Sea - COGITO_mtgs_100330EnvironmentalOpen in IMG/M
3300009435Pelagic marine microbial communities from North Sea - COGITO_mtgs_100413EnvironmentalOpen in IMG/M
3300009450Aquatic microbial communities from different depth of meromictic Siders Pond, Falmouth, Massachusetts; Cast 1, 4m depth; DNA IDBA-UDEnvironmentalOpen in IMG/M
3300009529Deep subsurface microbial communities from Black Sea to uncover new lineages of life (NeLLi) - Black_00105 metaGEnvironmentalOpen in IMG/M
3300010413Mangrove sediment microbial communities from Mai Po Nature Reserve Marshes in Hong Kong, China - Maipo_9EnvironmentalOpen in IMG/M
3300011118Deep subsurface microbial communities from Aarhus Bay to uncover new lineages of life (NeLLi) - Aarhus_00045 metaGEnvironmentalOpen in IMG/M
3300017708Marine viral communities from the Subarctic Pacific Ocean - Lowphox_04 viral metaGEnvironmentalOpen in IMG/M
3300017713Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 14 SPOT_SRF_2010-08-11EnvironmentalOpen in IMG/M
3300017714Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 35 SPOT_SRF_2012-08-15EnvironmentalOpen in IMG/M
3300017735Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 54 SPOT_SRF_2014-05-21EnvironmentalOpen in IMG/M
3300017748Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 16 SPOT_SRF_2010-10-21EnvironmentalOpen in IMG/M
3300017749Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 15 SPOT_SRF_2010-09-15EnvironmentalOpen in IMG/M
3300017776Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 17 SPOT_SRF_2010-11-23EnvironmentalOpen in IMG/M
3300017781Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 46 SPOT_SRF_2013-08-14EnvironmentalOpen in IMG/M
3300017950Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 041413US metaG (megahit assembly)EnvironmentalOpen in IMG/M
3300017951Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 101413BT metaG (megahit assembly)EnvironmentalOpen in IMG/M
3300017967Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 071411BT metaG (megahit assembly)EnvironmentalOpen in IMG/M
3300017985Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 101412BT metaG (megahit assembly)EnvironmentalOpen in IMG/M
3300017986Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 101405AT metaG (megahit assembly)EnvironmentalOpen in IMG/M
3300018041Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 041407BS metaG (megahit assembly)EnvironmentalOpen in IMG/M
3300018048Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 041412US metaG (megahit assembly)EnvironmentalOpen in IMG/M
3300018410Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 011510BT metaG (megahit assembly)EnvironmentalOpen in IMG/M
3300018413Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 011509CT metaG (megahit assembly)EnvironmentalOpen in IMG/M
3300018420Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 011512CT metaG (megahit assembly)EnvironmentalOpen in IMG/M
3300018428Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 101404AT metaG (megahit assembly)EnvironmentalOpen in IMG/M
3300020182Pelagic subsurface seawater microbial communities from Kabeltonne, Helgoland, North Sea - Helgoland_Spring_Bloom_20160502_2EnvironmentalOpen in IMG/M
3300020185Pelagic subsurface seawater microbial communities from Kabeltonne, Helgoland, North Sea - Helgoland_Spring_Bloom_20160517_1EnvironmentalOpen in IMG/M
3300020191Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 041410US metaG (spades assembly)EnvironmentalOpen in IMG/M
3300020347Marine microbial communities from Tara Oceans - TARA_B100000497 (ERX556109-ERR598994)EnvironmentalOpen in IMG/M
3300020439Marine microbial communities from Tara Oceans - TARA_B100001939 (ERX556062-ERR599029)EnvironmentalOpen in IMG/M
3300021347Coastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO266EnvironmentalOpen in IMG/M
3300021375Coastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO132EnvironmentalOpen in IMG/M
3300021957Estuarine water microbial communities from San Francisco Bay, California, United States - C33_18DEnvironmentalOpen in IMG/M
3300021958Estuarine water microbial communities from San Francisco Bay, California, United States - C33_27DEnvironmentalOpen in IMG/M
3300022183Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Nov_24 (v3)EnvironmentalOpen in IMG/M
3300022220Sediment microbial communities from San Francisco Bay, California, United States - SF_May12_sed_USGS_21EnvironmentalOpen in IMG/M
3300022926Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 041412US metaGEnvironmentalOpen in IMG/M
3300023251Saline water microbial communities from Ace Lake, Antarctica - #1073EnvironmentalOpen in IMG/M
3300024433Deep subsurface microbial communities from Black Sea to uncover new lineages of life (NeLLi) - Black_00105 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300024519 (restricted)Seawater microbial communities from Strait of Georgia, British Columbia, Canada - BC1_12_27EnvironmentalOpen in IMG/M
3300025057Marine viral communities from the Gulf of Mexico - 31_GoM_OMZ_CsCl metaG (SPAdes)EnvironmentalOpen in IMG/M
3300025083Marine viral communities from the Subarctic Pacific Ocean - 11_ETSP_OMZ_AT15265 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300025093Marine viral communities from the Gulf of Mexico - 32_GoM_OMZ_CsCl metaG (SPAdes)EnvironmentalOpen in IMG/M
3300025098Marine viral communities from the Subarctic Pacific Ocean - 13_ETSP_OMZ_AT15268 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300025108Marine viral communities from the Subarctic Pacific Ocean - 17_ETSP_OMZ_AT15314 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300025425Saline lake microbial communities from Ace Lake, Antarctica - Antarctic Ace Lake Metagenome 02UK8 (SPAdes)EnvironmentalOpen in IMG/M
3300025543Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1504_2 Viral MetaG (SPAdes)EnvironmentalOpen in IMG/M
3300025601Saline lake microbial communities from Ace Lake, Antarctica - Antarctic Ace Lake Metagenome 02UK1 (SPAdes)EnvironmentalOpen in IMG/M
3300025603Saline lake microbial communities from Ace Lake, Antarctica - Antarctic Ace Lake Metagenome 02UKE (SPAdes)EnvironmentalOpen in IMG/M
3300025632Pelagic marine microbial communities from North Sea - COGITO_mtgs_100413 (SPAdes)EnvironmentalOpen in IMG/M
3300025671Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Mar_4 (SPAdes)EnvironmentalOpen in IMG/M
3300025759Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Nov_24 (SPAdes)EnvironmentalOpen in IMG/M
3300025853Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Sep_01 (SPAdes)EnvironmentalOpen in IMG/M
3300025889Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Nov_18 (SPAdes)EnvironmentalOpen in IMG/M
3300025892Pelagic Microbial community sample from North Sea - COGITO 998_met_01 (SPAdes)EnvironmentalOpen in IMG/M
3300027861 (restricted)Seawater microbial communities from Saanich Inlet, British Columbia, Canada - Na_anoxic_12_MGEnvironmentalOpen in IMG/M
3300027976Freshwater microbial communities from Lake Fryxell liftoff mats and glacier meltwater in Antarctica - FRY-01 (SPAdes)EnvironmentalOpen in IMG/M
3300028045 (restricted)Seawater microbial communities from Saanich Inlet, British Columbia, Canada - Na_anoxic_10_MGEnvironmentalOpen in IMG/M
3300029293Marine harbor viral communities from the Indian Ocean - SCH2EnvironmentalOpen in IMG/M
3300029302Marine harbor viral communities from the Indian Ocean - SRB3EnvironmentalOpen in IMG/M
3300029306Marine harbor viral communities from the Indian Ocean - SCH3EnvironmentalOpen in IMG/M
3300029308Marine harbor viral communities from the Indian Ocean - SRB2EnvironmentalOpen in IMG/M
3300029345Marine harbor viral communities from the Indian Ocean - SCH1EnvironmentalOpen in IMG/M
3300031519Sea-ice brine microbial communities from Beaufort Sea near Barrow, Alaska, United States - SB 0.2EnvironmentalOpen in IMG/M
3300031565Soil microbial communities from Risofladan, Vaasa, Finland - UN-2EnvironmentalOpen in IMG/M
3300031578Soil microbial communities from Risofladan, Vaasa, Finland - TR-2EnvironmentalOpen in IMG/M
3300031669Soil microbial communities from Risofladan, Vaasa, Finland - TR-1EnvironmentalOpen in IMG/M
3300031673Soil microbial communities from Risofladan, Vaasa, Finland - TR-3EnvironmentalOpen in IMG/M
3300034375Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Aug_30 (v4)EnvironmentalOpen in IMG/M

Geographical Distribution
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Family Sequences

Note: Some of these sequences are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Protein ID Sample Taxon ID Habitat Sequence
DelMOSpr2010_1000165543300000116MarineMDLEGKVSFISGFTLTSLWTMPLMEFTMAFFLGLIGGLGGLVGKLIFKKVEKWKNK*
DelMOWin2010_1004701053300000117MarineMNMDNKISFLSGFTLTSIWTMTLYEIGLAFLLGLVGGIGGLVGRWIIKKLGWFGQK*
OpTDRAFT_10048029123300000928Freshwater And MarineMSMEHKLSFFSGFALTSLWTMPLMEFTMAFFLGLVGGLGGLVGRLIFNKIEKWMNK*
NpDRAFT_10037744123300000929Freshwater And MarineMDIQGKISFISGFTLTSLWTMPLMEFTMAFLLGLVGGIGGLVGKLIFNKIDKWKNK*
Ga0065726_17026103300004369SalineMDLDNKISFISGFTLTSIWTLTLYELTMALILGVVGGFGGMFGKWLFKKLGWFGQSNK*
Ga0066224_127164423300004457MarineYKIKKQIKIKYMQLIQQKISFICGFLLTSLWTMPLMEIGMAFLLGLVGGVGGLVGRLIFNKIDKWKNG*
Ga0073579_137536033300005239MarineMNIDSKISFISGFSLTTLWTMPLYELSMAFLLGLIGGVGGLVGKWLMKKLGWFNK*
Ga0074649_124827823300005613Saline Water And SedimentMDNKISFFSGFTITSLWTMTLYEIGLAFFLGLVGGLGGLFGKWIIRKLGWFGQDKK*
Ga0075108_1000263523300005913Saline LakeMSNIDNKISFISGFALTSTWTMPLYNLGMALLLGIVGGFGGLVGRWVYKKIWPDV*
Ga0075124_1017144913300005936Lake WaterISGFALTSTWTMPLYNLGMALLLGIVGGFGGLVGRWVYKKIWPDV*
Ga0075466_105250123300006029AqueousVKLTQQNKMNMDNKISFLSGFTLTSIWTMTLYEIGLAFLLGLVGGIGGLVGRWIIKKLGWFGQK*
Ga0075466_113421023300006029AqueousMTIDSKISFFSGFTLTSLWTMPLMEVGMAFLLGLVGGIGGLVGKWLINKSGWFKDTKK*
Ga0098073_1000145263300006734MarineMNMDNKISFISGFTLTSIWTMTLYEIGLAFLLGIVGGIGGLVGRWIIKKLGWFGQK*
Ga0098048_104173633300006752MarineMHMEQKISFFSGFALTSLWTMPLMEFTMAFLLGLVGGLGGLVGRLIFNKVEKWMNK*
Ga0098074_119161523300006790MarineMDNKISFFSGFTLTSIWTMPLYEMSMALLLGIIGGFGGMIGKWVWNKINKK*
Ga0098055_101800033300006793MarineMNNMDNKISWISGFTLTSIWTMPLFEMGMALLLGIIGGFGGMIGKWAWNKINKK*
Ga0098055_107669643300006793MarineMNIDSKISFFSGFTLTSLWTMPLMEVGMAFILGLVGGIGGLLGKWLMQKSGWFKDTKK*
Ga0098055_123970723300006793MarineMNMEHKISFFSGFALTSLWTMPLMEFTMAFLLGLVGGLGGLVGRLIFNKVEKWMNK*
Ga0070749_1000475693300006802AqueousMEQKISFISGFALTSLWTMPLYEMGMALVLGIIGGFGGLVGRWIFKIFESKWKK*
Ga0070749_1001983733300006802AqueousMDLDNRISFLSGFTVTSLWTMTLYELGLAFLLGLVGGIGGLVGKWIIKKSGWFGQENK*
Ga0070754_10003205173300006810AqueousMEQKISFISGFALTSLWTMPLYEMGMALVLGIIGGFGGLVGRWIFKILESKWKK*
Ga0070754_1001078143300006810AqueousMEQKISFISGFTLTSIWTMPLYDMGMALILGIIGGFGGLVGRAIFKKIEQWKNK*
Ga0070754_1013704423300006810AqueousMDMEQKISFFSGFALTSLWTMPLMEFTMAFFLGLIGGLGGLVGRLIWNKIERWKK*
Ga0070750_1035069923300006916AqueousMNNMDNRLSFFSGFTLTSLWTMPLYEVGMAFLLGLVGGIGGLVGKWIWNKINKK*
Ga0070748_107668843300006920AqueousMTIDSKISFFSGFTLTSLWTMPLMEVGMAFLLGLVGGMGGLVGKWLINKSGWFKNTKK*
Ga0098045_103035143300006922MarineMHMEQKISFFSGFALTSLWTMPLMEFTMAFLLGLVGGLGGLVGRLIFNKVEKWM
Ga0075110_103527423300007074Saline LakeMSNIDNKISFISGFALTSTWTMPLYNLGMALLLGIVGGFGGLVGRW
Ga0099847_1001594113300007540AqueousMTNLDNKISFISGFGLTSLWAMPIMELAMALLLGLVGGIGGVLGKWIIYKLGWFKRDV*
Ga0099847_117387633300007540AqueousFSLTTLWTMPLYELSMAFLLGLIGGVGGLVGKWLMKKLGWFNK*
Ga0070751_131938213300007640AqueousKISFISGFSLTTLWTMPIYELSMALLLGLVGGIGGVLGKWIIYKTGWFNKK*
Ga0102963_104143933300009001Pond WaterMEQKISFISGFTLTSIWTMPLYDMGMALILGIIGGFGGLVGRAIFKKIE
Ga0102963_106627733300009001Pond WaterMEQKISFISGFTLTSLWTMPLYDMGMALILGIIGGFGGLVGRAIFKKIEQ
Ga0102963_107251843300009001Pond WaterMNMDNKISFFSGFTLTSLWTMTLYEIGLAFFLGIVGGIGGLVGRWIIKKLGWFGQK*
Ga0115547_110365933300009426Pelagic MarineMTIDSKISFFSGFTLTSLWTMPLMEVGMAFLLGLVGGIGGLFGKWLIKKLGWFGQK*
Ga0115545_101600333300009433Pelagic MarineMTIDSKISFFSGFTLTSLWTMPLMELGMAFLLGLVGGLGGLFGKWLIKKLGWLGQK*
Ga0115546_105558323300009435Pelagic MarineMTIDSKISFFSGFTLTSLWTMPLMEVGMAFLLGLVGGIGGLVGKWIIKKLGWFGQK*
Ga0127391_102995423300009450Meromictic PondMGLDNKISFLSGFILTSIWTMTLYELTMALFLGIVGGMGGIIGKWIIRKFGWFGQNQDRRVK*
Ga0114919_1021945643300009529Deep SubsurfaceMIKMDLDNKISFISGFTLTSLWTMPIMELGMAFLLGLVGGLGGLFGKWISKKCGWFGDNKG*
Ga0114919_1022562223300009529Deep SubsurfaceVNKKMDLDNKISFISGFTLTSIWTMTLYELTMALFLGIIGGIGGMFGKWLFKKLGWFGQSDK*
Ga0136851_1228348113300010413Mangrove SedimentMDLDNKISFISGFTLTSIWTMTLYELTMALFLGIIGGIGGIVGKWIIRKLGWFGQDKK*
Ga0114922_1008859143300011118Deep SubsurfaceMHMEQKISFFSGFALTSLWTMPIMEFTMAFFLGLIGGLGGLVGRLIWNKIERWKK*
Ga0181369_100596333300017708MarineMNYMEQKISFFSGFALTSLWTMPLMEFTMAFLLGLVGGLGGLVGRLIFNKVEKWMNK
Ga0181391_100099123300017713SeawaterMEQKISFFSGFALTSLWTMPLYELSMAFLLGLVGGLGGLVGRLIFNKVDKWMNK
Ga0181412_100087893300017714SeawaterMYMEQKISFISGFTLTSLWTMPLMEFTMAFFLGLVGGIGGLLGRFIMNKTGWFDKKDE
Ga0181412_100413923300017714SeawaterMNYMEQKISFFSGFALTSLWTMPLYELSMAFLLGLVGGLGGLVGRLIFNKVDKWMNK
Ga0181431_101146023300017735SeawaterMNNMDNRLSFFSGFTLTSIWTMPLYEMSMAFLLGLVGGLGGLVGKWIWNKINKK
Ga0181393_100641733300017748SeawaterMNYMEQKISFFSGFALTSLWTMPLYELSMAFLLGLVGGLGGLVGRLIFKKIEEWKNK
Ga0181392_1000088303300017749SeawaterMNNMDNKISWISGFTLTSIWTMPLFEMGMALLLGIIGGFGGMIGKWVWNKINKK
Ga0181394_115256113300017776SeawaterSFFSGFTLTSLWTMPLMEIGMAFVLGLVGGLGGLVGKWLMNKTGWFNKKDE
Ga0181423_100170233300017781SeawaterMNNMDNKISFFSGFTLTSIWTMPLYEMSMAFLLGLVGGLGGLVGKWIWNKINKK
Ga0181607_1027534123300017950Salt MarshMEQKISFISGFALTSLWTMPLYDMGMALILGIIGGFGGLVGRAIFKKIEEWKNK
Ga0181607_1062470523300017950Salt MarshMEQKISFISGFTLTTLWTMPLYEMGMALILGIIGGFGGLVGRAIYK
Ga0181577_1014301243300017951Salt MarshMNNMDNKISFISGFTLTSIWTMTLYEIGLAFFLGIVGGIGGLVGRWIIKKLGWFGQK
Ga0181590_1092251223300017967Salt MarshMTNLDNKISFISGFTITSLWTMTLYEIGLAFFLGLVGGLGGLVGKWLVKKSGWFGKE
Ga0181590_1109177023300017967Salt MarshMGNLDNKISFASGFFLTSTWTLPLMEIGMALLLGIVGGFSGMFGKWLFTRIGWFKNTKK
Ga0181576_1059911213300017985Salt MarshISFISGFTLTSIWTLTLYELTMALILGVVGGFGGMFGKWLFKKLGWFGNNKG
Ga0181569_1110962223300017986Salt MarshMNNMDNKISFISGFTLTSIWTMTLYEIGLAFFLGLVGGIGGLVGRWIIKKLGWFGQK
Ga0181601_1022240523300018041Salt MarshMEQKISFISGFTLTSLWTMPLYDMGMALILGIIGGFGGLVGRWIFKKLEQWKNK
Ga0181606_1068446623300018048Salt MarshMEQKISFISGFTLTSLWTMPLYDMGMALILGIIGGFGGLVGRAIFKKIEQWKNK
Ga0181561_1036169123300018410Salt MarshMQNNIMNLDNKISFISGFGLTSLWAMPIVELSMALLLGLVGGIGGVVGKWIIYKLGWFKRDV
Ga0181560_1025971923300018413Salt MarshMGLDNKISFISGFTLTSLWTMPLYELGMALALGIIGGLGGVFGKWIGYKL
Ga0181563_1006322933300018420Salt MarshMNLDNKISFISGFGLTSLWAMPIVELSMALLLGLVGGIGGVVGKWIIYKLGWFKRDV
Ga0181568_1094901823300018428Salt MarshMNMDNKISFLSGFTLTSIWTMTLYEIGLAFLLGLVGGIGGLVGRWIIKKLG
Ga0206129_1021657313300020182SeawaterSFFSGFTLTSLWTMPLMEVGMAFLLGLVGGIGGLVGKWLINKSGWFKNKKK
Ga0206131_1026221143300020185SeawaterMTIDSKISFFSGFTLTSLWTMPLMEVGMAFLLGLVGGIGGLVGKWLINKSGWFKNKKK
Ga0181604_1030203423300020191Salt MarshMEQKISFISGFALTSLWTMPLYDMGMALILGIIGGFGGLVGRFIFKKLEQWKNK
Ga0211504_100991023300020347MarineMNIDSKISFFSGFTLTSLWTMPLMEVGMAFLLGLVGGLGGLVGKWIMKKLGWFGQSNK
Ga0211558_1011672523300020439MarineVIHTQQNKMNMDNKISFISGFTLTSIWTMTLYEIGLAFLLGIVGGIGGLVGKWIIKKLGWFGQK
Ga0213862_1033703913300021347SeawaterMNMDNKISFLSGFTLTSIWTMTLYEIGLAFLLGLVGGIGGLVGRWIIKKLGWFGQK
Ga0213869_1000062933300021375SeawaterMNIDSKISFISGFSLTTLWTMPLYELSMAFLLGLIGGVGGLVGKWLMKKLGWFNK
Ga0222717_1026744723300021957Estuarine WaterMNIDSKISFFSGFTLTSLWTMPLMEVGMAFLLGLVGGIGGLVGKWLMNKSGWFKEKKK
Ga0222718_1000644073300021958Estuarine WaterVKLTQQNKMNMDNKISFFSGFTLTSIWTMTLYEIGLAFLLGLVGGIGGLVGRWIIKKLGWFGQK
Ga0196891_100890753300022183AqueousVKLTQQNKMNMDNKISFLSGFTLTSIWTMTLYEIGLAFLLGLVGGIGGLVGRWIIKKLGWFGQK
Ga0224513_1024181813300022220SedimentMNIDSKISFFSGFTLTSLWTMPLMEVGMAFLLGLVGGIGGLVGKWIMKKLGWFGQSNK
Ga0255753_137424713300022926Salt MarshMEQKISFISGFALTSLWTMPLYDMGMALILGIIGGFGGLVGRWIFKKLEQWKNK
Ga0222683_104182123300023251Saline WaterMSNIDNKISFISGFALTSTWTMPLYNLGMALLLGIVGGFGGLVGRWIYKKIWPNV
Ga0209986_1042608823300024433Deep SubsurfaceMNLDNKISFISGFTITSLWTMPIMEIGMAFLLGLVGGLGGLFGKWISKKCGWFGQDKK
(restricted) Ga0255046_1064095723300024519SeawaterMYNLDNKISFISGFTLTSLWTMPLYELSMALLLGLVGGIGGVLGKWITYKLGLFRKDDK
Ga0208018_10141433300025057MarineMNMDNKISFISGFTLTSIWTMTLYEIGLAFLLGIVGGIGGLVGRWIIKKLGWFGQK
Ga0208791_104488923300025083MarineMNNMDNKISWISGFTLTSIWTMPLFEMGMALLLGIIGGFGGMIGKWAWNKINKK
Ga0208794_1003921133300025093MarineMDNKISFLSGFTLTSIWTMTLYEIGLAFFLGIVGGIGGLVGRWIIKKLGWFGQK
Ga0208434_107314413300025098MarineEHKISFFSGFALTSLWTMPLMEFTMAFLLGLVGGLGGLVGRLIFNKVEKWMNK
Ga0208793_117331313300025108MarineMNNMDNKISWISGFTLTSIWTMPLFEMGMALLLGIIGGFGGMIGKWAWNK
Ga0208646_1001780103300025425Saline LakeMSNIDNKISFISGFALTSTWTMPLYNLGMALLLGIVGGFGGLVGRWVYKKIWPDV
Ga0208303_111970813300025543AqueousGFALTSIWAMPIMELAMALLLGLVGGIGGVVGKWIIYKTGWFRRDA
Ga0208768_100266923300025601Saline LakeMGNIDNKISFISGFALTSTWTMPLYNLGMALLLGIVGGFGGLVGRWIYKKIWPNV
Ga0208414_106624123300025603Saline LakeMSNIDNKISFISGFALTSTWTMPLYNLGMALLLGIVGGFGGLVGRWIYKKIWP
Ga0209194_107465823300025632Pelagic MarineMTIDSKISFFSGFTLTSLWTMPLMEVGMAFLLGLVGGIGGLVGKWIIKKLGWFGQK
Ga0208898_100981643300025671AqueousMEQKISFISGFTLTSIWTMPLYDMGMALILGIIGGFGGLVGRAIFKKIEQWKNK
Ga0208899_113436233300025759AqueousMEQKISFISGFALTSLWTMPLYEMGMALVLGIIGGFGGLVGRWIFKILESKWKK
Ga0208645_1005090243300025853AqueousMDNKISFLSGFTLTSIWTMTLYEIGLAFLLGLVGGIGGLVGRWIIKKLGWFGQK
Ga0208645_106186533300025853AqueousMEQKISFISGFALTSLWTMPLYEMGMALVLGIIGGFGGLVGRWIFKIFESKWKK
Ga0208644_114763833300025889AqueousMDLDNKISFFSGFTLTSLWTMPLYDITMALVLGIVGGFGGMFGKFIYSKITGKK
Ga0209630_1038869423300025892Pelagic MarineMTIDSKISFFSGFTLTSLWTMPLMELGMAFLLGLVGGLGGLFGKWLIKKLGWLGQK
(restricted) Ga0233415_1063825823300027861SeawaterMYIMENKVSFISGFVLTSLWTMPLMEISMAFVLGLVGGLGGLVGRVIFKKLEKWLNKE
Ga0209702_10013765103300027976FreshwaterMSNIDNKISFISGFALTSTWTLPLYNIGMALLLGIVGGFGGLVGRWVYKKIWPNV
(restricted) Ga0233414_1056226223300028045SeawaterMNIDNKISFFSGFTLTSLWTMPLMEIGMAFVLGLVGGLGGLVGKWLMNKTGWFNKKDE
Ga0135211_105012823300029293Marine HarborMNNMDNKISFFSGFTITSLWTMPIMEIGMAFLLGIVGGIGGLVGKWIIKKLGWFGQK
Ga0135227_100209023300029302Marine HarborMNNMDNRISFFSGFTLTSIYTMPLYEITMALFLGIVGGFGGMLGKWIWNKINKNGK
Ga0135212_103147223300029306Marine HarborMTNLDNKISFISGFTITSLWTMTLYEIGLAFLLGLVGGIGGLVGKWLMKKSGWFGKE
Ga0135226_103761923300029308Marine HarborMNMDNKISFISGFTLTSIWTMTLYEIGLAFLLGLVGGIGGLVGRWIIKKLGWFGQK
Ga0135210_103228023300029345Marine HarborMTNLDNKISFISGFTITSLWTMTLYEIGLAFFLGLVGGIGGLVGKWIMKKLGWFGKE
Ga0307488_1005224113300031519Sackhole BrineMQLIQQKISFICGFLLTSLWTMPLMEIGMAFVLGLVGGVGGLVGRLIFNKIDKWKNG
Ga0307379_1106932323300031565SoilMHIMENKVSFISGFVLTSLWTMPLYEISMAFVLGLVGGLGGLVGRVIFKKIEKWMKKD
Ga0307376_1009235433300031578SoilMEQKISFISGFTLTTIWTMPLYEISMAFVLGLVGGLGGLVGRVIFKKIEKWLNKE
Ga0307375_1056899123300031669SoilMGLDNKISFISGFTLTSLWTMPLYDVSMALLLGLIGGIGGVIGKWLINKTPWFKKDV
Ga0307377_1037660633300031673SoilMEQKISFISGFTLTTIWTMPLYEISMAFVLGLVGGLGGLVGRVIFKKIEKWMKKD
Ga0307377_1059277233300031673SoilKVSFISGFVLTSLWTMPLYEISMAFVLGLVGGLGGLVGRVIFKKIEKWLNKE
Ga0348336_045684_3_1583300034375AqueousMEQKISFISGFALTSLWTMPLYEMGMALVLGIIGGFGGLVGRWIFKILESKW


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